Hb_001301_210

Information

Type -
Description -
Location Contig1301: 149000-154289
Sequence    

Annotation

kegg
ID rcu:RCOM_0585000
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012070805.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
swissprot
ID Q9FFT9
description DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1
trembl
ID A0A067L4V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00876 PE=3 SV=1
Gene Ontology
ID GO:0005730
description dead-box atp-dependent rna helicase 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09027: 149418-150595 , PASA_asmbl_09028: 150603-151144 , PASA_asmbl_09029: 151284-152401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_210 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
2 Hb_005129_050 0.0584252976 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
3 Hb_000120_510 0.0632563262 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
4 Hb_002883_010 0.0693280018 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
5 Hb_000244_240 0.0739538172 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000230_370 0.0745896138 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
7 Hb_001396_290 0.0753961957 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
8 Hb_000531_090 0.0791339015 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
9 Hb_000331_190 0.0808136182 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
10 Hb_000239_070 0.0814777577 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_001437_100 0.0823957752 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
12 Hb_073171_080 0.0825859297 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
13 Hb_000343_210 0.0827737397 - - ran-binding protein, putative [Ricinus communis]
14 Hb_006829_090 0.0831505769 - - PREDICTED: protein MOS2 [Jatropha curcas]
15 Hb_002043_170 0.0845920351 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_000340_160 0.0848783845 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
17 Hb_024990_010 0.085711379 - - PREDICTED: la protein 1 [Jatropha curcas]
18 Hb_046615_020 0.0872937776 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
19 Hb_002048_090 0.0880697072 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
20 Hb_000335_010 0.0883190069 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001301_210 Hb_001301_210 Hb_005129_050 Hb_005129_050 Hb_001301_210--Hb_005129_050 Hb_000120_510 Hb_000120_510 Hb_001301_210--Hb_000120_510 Hb_002883_010 Hb_002883_010 Hb_001301_210--Hb_002883_010 Hb_000244_240 Hb_000244_240 Hb_001301_210--Hb_000244_240 Hb_000230_370 Hb_000230_370 Hb_001301_210--Hb_000230_370 Hb_001396_290 Hb_001396_290 Hb_001301_210--Hb_001396_290 Hb_001278_060 Hb_001278_060 Hb_005129_050--Hb_001278_060 Hb_005129_050--Hb_002883_010 Hb_001433_190 Hb_001433_190 Hb_005129_050--Hb_001433_190 Hb_007668_020 Hb_007668_020 Hb_005129_050--Hb_007668_020 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_000120_510--Hb_001396_290 Hb_006829_090 Hb_006829_090 Hb_000120_510--Hb_006829_090 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000120_510--Hb_000244_240 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_002159_040 Hb_002159_040 Hb_000244_240--Hb_002159_040 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000244_240--Hb_000230_370 Hb_000230_370--Hb_046615_020 Hb_000327_310 Hb_000327_310 Hb_000230_370--Hb_000327_310 Hb_000230_370--Hb_002883_010 Hb_001975_020 Hb_001975_020 Hb_000230_370--Hb_001975_020 Hb_000318_140 Hb_000318_140 Hb_000230_370--Hb_000318_140 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7277 8.03657 3.39653 3.54563 14.9519 21.3015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14825 4.37314 3.62409 6.02427 4.791

CAGE analysis