Hb_001301_230

Information

Type -
Description -
Location Contig1301: 164226-168567
Sequence    

Annotation

kegg
ID rcu:RCOM_0584960
description hypothetical protein
nr
ID XP_012070808.1
description PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09033: 163812-165710 , PASA_asmbl_09035: 167610-167737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_230 0.0 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
2 Hb_000808_070 0.0622110131 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
3 Hb_004899_070 0.0991550487 - - PREDICTED: RRP12-like protein [Jatropha curcas]
4 Hb_006501_020 0.1008971245 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
5 Hb_000265_250 0.105010764 - - auxilin, putative [Ricinus communis]
6 Hb_002477_150 0.108613327 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
7 Hb_011465_030 0.1087283417 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_003710_040 0.1087393369 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_000640_200 0.110227231 - - hypothetical protein RCOM_1346600 [Ricinus communis]
10 Hb_003157_010 0.11178096 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
11 Hb_000098_130 0.1131732954 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
12 Hb_003866_020 0.1139452235 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001059_100 0.1142534758 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
14 Hb_000181_180 0.1152048021 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
15 Hb_000997_030 0.1156627807 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
16 Hb_002374_350 0.1167713141 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
17 Hb_000813_100 0.1197789498 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
18 Hb_148209_020 0.1198621875 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
19 Hb_002762_130 0.1205092071 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
20 Hb_012180_050 0.1211241066 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_230 Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_001301_230--Hb_000808_070 Hb_004899_070 Hb_004899_070 Hb_001301_230--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_001301_230--Hb_006501_020 Hb_000265_250 Hb_000265_250 Hb_001301_230--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_001301_230--Hb_002477_150 Hb_011465_030 Hb_011465_030 Hb_001301_230--Hb_011465_030 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_006501_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_006501_020--Hb_006588_050 Hb_006501_020--Hb_003157_010 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070 Hb_000265_250--Hb_011465_030 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_002477_150--Hb_011465_030 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_011465_030--Hb_001946_300 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0055 52.2991 9.51228 11.8632 34.4308 54.1671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4291 8.24172 8.68553 18.7809 8.18753

CAGE analysis