Hb_001301_310

Information

Type -
Description -
Location Contig1301: 231047-231415
Sequence    

Annotation

kegg
ID rcu:RCOM_0584600
description hypothetical protein
nr
ID XP_002522942.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09043: 230604-231525
cDNA
(Sanger)
(ID:Location)		 024_A21.ab1: 230842-231525 , 031_D10.ab1: 230802-231525

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001958_040 0.0700796409 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
3 Hb_000397_060 0.0802040337 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
4 Hb_004128_150 0.0868110742 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
5 Hb_002053_100 0.0868688024 - - actin binding protein, putative [Ricinus communis]
6 Hb_000073_040 0.0916564028 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
7 Hb_005357_140 0.093332548 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
8 Hb_049846_010 0.0954505365 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
9 Hb_023640_020 0.0964399034 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004007_050 0.0991158379 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
11 Hb_000010_320 0.1035608049 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
12 Hb_000283_090 0.1049004584 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_059832_010 0.1063010189 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
14 Hb_001349_050 0.1066234385 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
15 Hb_001439_240 0.1075145269 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_000160_190 0.1085056215 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
17 Hb_002045_160 0.111544621 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
18 Hb_000010_430 0.112421067 - - Esterase precursor, putative [Ricinus communis]
19 Hb_004241_160 0.1129483589 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
20 Hb_000375_100 0.1132053141 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]

Gene co-expression network

sample Hb_001301_310 Hb_001301_310 Hb_001958_040 Hb_001958_040 Hb_001301_310--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_001301_310--Hb_000397_060 Hb_004128_150 Hb_004128_150 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_000073_040 Hb_000073_040 Hb_001301_310--Hb_000073_040 Hb_005357_140 Hb_005357_140 Hb_001301_310--Hb_005357_140 Hb_001958_040--Hb_000073_040 Hb_001958_040--Hb_000397_060 Hb_004007_050 Hb_004007_050 Hb_001958_040--Hb_004007_050 Hb_001958_040--Hb_004128_150 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_000397_060--Hb_000073_040 Hb_000397_060--Hb_005357_140 Hb_072952_010 Hb_072952_010 Hb_000397_060--Hb_072952_010 Hb_000010_320 Hb_000010_320 Hb_000397_060--Hb_000010_320 Hb_004128_150--Hb_004007_050 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_023640_020 Hb_023640_020 Hb_004128_150--Hb_023640_020 Hb_011310_170 Hb_011310_170 Hb_004128_150--Hb_011310_170 Hb_004453_160 Hb_004453_160 Hb_004128_150--Hb_004453_160 Hb_001439_240 Hb_001439_240 Hb_002053_100--Hb_001439_240 Hb_000830_010 Hb_000830_010 Hb_002053_100--Hb_000830_010 Hb_005276_190 Hb_005276_190 Hb_002053_100--Hb_005276_190 Hb_000340_550 Hb_000340_550 Hb_002053_100--Hb_000340_550 Hb_001349_050 Hb_001349_050 Hb_002053_100--Hb_001349_050 Hb_000258_400 Hb_000258_400 Hb_000073_040--Hb_000258_400 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_000139_040 Hb_000139_040 Hb_005357_140--Hb_000139_040 Hb_049846_010 Hb_049846_010 Hb_005357_140--Hb_049846_010 Hb_005357_140--Hb_001958_040 Hb_000283_090 Hb_000283_090 Hb_005357_140--Hb_000283_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.33226 144.88 72.1675 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.962456 21.6364

CAGE analysis