Hb_001301_320

Information

Type -
Description -
Location Contig1301: 244862-250005
Sequence    

Annotation

kegg
ID rcu:RCOM_0081860
description hypothetical protein
nr
ID XP_012070820.1
description PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067KSK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00884 PE=4 SV=1
Gene Ontology
ID GO:0009653
description actin cytoskeleton-regulatory complex protein pan-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09044: 245195-249823 , PASA_asmbl_09046: 244854-245788 , PASA_asmbl_09048: 247328-247723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_320 0.0 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
2 Hb_000283_130 0.1046512278 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
3 Hb_004635_050 0.108744723 - - nucleolar phosphoprotein, putative [Ricinus communis]
4 Hb_001083_050 0.1098806939 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
5 Hb_000034_160 0.1131642688 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
6 Hb_001141_370 0.1144522118 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
7 Hb_000258_120 0.1148656761 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
8 Hb_004032_180 0.1160762252 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
9 Hb_001189_130 0.1164723292 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
10 Hb_002326_020 0.1174830693 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
11 Hb_000291_060 0.1180308505 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
12 Hb_000540_120 0.1182649266 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
13 Hb_005883_010 0.1204274466 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000780_170 0.1205990498 - - PREDICTED: OBERON-like protein [Jatropha curcas]
15 Hb_000116_060 0.1218463408 - - plant ubiquilin, putative [Ricinus communis]
16 Hb_007403_050 0.122297926 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
17 Hb_006816_050 0.1224023626 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
18 Hb_009771_100 0.1230528799 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
19 Hb_000457_050 0.1234125701 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
20 Hb_000418_140 0.1235169875 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]

Gene co-expression network

sample Hb_001301_320 Hb_001301_320 Hb_000283_130 Hb_000283_130 Hb_001301_320--Hb_000283_130 Hb_004635_050 Hb_004635_050 Hb_001301_320--Hb_004635_050 Hb_001083_050 Hb_001083_050 Hb_001301_320--Hb_001083_050 Hb_000034_160 Hb_000034_160 Hb_001301_320--Hb_000034_160 Hb_001141_370 Hb_001141_370 Hb_001301_320--Hb_001141_370 Hb_000258_120 Hb_000258_120 Hb_001301_320--Hb_000258_120 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_010738_010 Hb_010738_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_000283_130--Hb_004635_050 Hb_007943_120 Hb_007943_120 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_033883_060 Hb_033883_060 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020 Hb_000261_220 Hb_000261_220 Hb_001083_050--Hb_000261_220 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_004032_180 Hb_004032_180 Hb_000034_160--Hb_004032_180 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000034_160--Hb_000457_050 Hb_000034_160--Hb_010738_010 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_002326_020 Hb_002326_020 Hb_000258_120--Hb_002326_020 Hb_000258_120--Hb_000034_160 Hb_001662_030 Hb_001662_030 Hb_000258_120--Hb_001662_030 Hb_031527_090 Hb_031527_090 Hb_000258_120--Hb_031527_090 Hb_000258_120--Hb_000283_130 Hb_000258_120--Hb_000457_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.507 45.5819 18.0102 15.3008 29.0969 25.0641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8931 6.64342 14.6552 10.4111 8.08499

CAGE analysis