Hb_001301_340

Information

Type -
Description -
Location Contig1301: 255511-258994
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42660g
description POPTRDRAFT_829920; endoribonuclease L-PSP family protein
nr
ID XP_002300475.1
description endoribonuclease L-PSP family protein [Populus trichocarpa]
swissprot
ID Q94JQ4
description Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1
trembl
ID A9PE22
description Endoribonuclease L-PSP family protein OS=Populus trichocarpa GN=POPTR_0001s42660g PE=2 SV=1
Gene Ontology
ID GO:0005739
description endoribonuclease l-psp family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09053: 255551-258957
cDNA
(Sanger)
(ID:Location)		 009_K14.ab1: 255719-258945 , 019_D04.ab1: 255730-258959 , 020_E02.ab1: 255687-258939 , 022_J19.ab1: 255874-258942 , 023_F07.ab1: 255847-258940 , 048_J23.ab1: 255724-258939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_340 0.0 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
2 Hb_000035_240 0.0877152267 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007894_050 0.0935056473 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
4 Hb_000317_260 0.0945359412 - - unknown [Populus trichocarpa]
5 Hb_000394_180 0.0951157629 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
6 Hb_001369_790 0.0981865056 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
7 Hb_000392_550 0.0988905054 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001946_140 0.1014357054 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_001073_080 0.1029833296 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
10 Hb_004965_110 0.1035053 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_004440_060 0.1063967973 - - aldose 1-epimerase, putative [Ricinus communis]
12 Hb_004257_010 0.1068945656 - - CMP-sialic acid transporter, putative [Ricinus communis]
13 Hb_000390_090 0.108160372 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
14 Hb_007904_230 0.1083129986 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
15 Hb_000926_080 0.1091992752 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
16 Hb_003411_090 0.109232685 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_003266_030 0.1094674903 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
18 Hb_000413_240 0.1145586985 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
19 Hb_007192_030 0.1147006334 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
20 Hb_000510_030 0.1166846906 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001301_340 Hb_001301_340 Hb_000035_240 Hb_000035_240 Hb_001301_340--Hb_000035_240 Hb_007894_050 Hb_007894_050 Hb_001301_340--Hb_007894_050 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_000392_550 Hb_000392_550 Hb_001301_340--Hb_000392_550 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_001329_090 Hb_001329_090 Hb_000035_240--Hb_001329_090 Hb_000390_090 Hb_000390_090 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_001073_080 Hb_001073_080 Hb_007894_050--Hb_001073_080 Hb_003126_130 Hb_003126_130 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_007894_050--Hb_000392_550 Hb_001377_450 Hb_001377_450 Hb_007894_050--Hb_001377_450 Hb_004440_060 Hb_004440_060 Hb_000317_260--Hb_004440_060 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_000317_260--Hb_001369_790 Hb_000394_180--Hb_004951_060 Hb_007192_030 Hb_007192_030 Hb_000394_180--Hb_007192_030 Hb_000394_180--Hb_001369_790 Hb_006846_150 Hb_006846_150 Hb_000394_180--Hb_006846_150 Hb_004257_010 Hb_004257_010 Hb_000394_180--Hb_004257_010 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_001369_790--Hb_000392_550 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6393 8.22824 72.9266 44.5661 14.0087 15.434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.7399 61.0387 30.9004 22.9318 57.3345

CAGE analysis