Hb_001304_110

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1304: 202667-210669
Sequence    

Annotation

kegg
ID rcu:RCOM_1120400
description WRKY transcription factor, putative
nr
ID AEE81757.1
description WRKY protein [Hevea brasiliensis]
swissprot
ID Q9SI37
description WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1
trembl
ID F6M7Y7
description WRKY protein OS=Hevea brasiliensis GN=WRKY1 PE=2 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09065: 202603-204382 , PASA_asmbl_09066: 202603-203461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001304_110 0.0 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
2 Hb_005582_040 0.0529277251 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
3 Hb_010068_080 0.0607305491 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
4 Hb_005686_090 0.0624028281 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
5 Hb_001999_290 0.0624414944 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
6 Hb_011386_010 0.0625720965 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_005054_110 0.0629206788 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
8 Hb_000640_040 0.0636812315 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_002830_010 0.0662636201 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
10 Hb_008033_040 0.0668352811 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
11 Hb_003680_120 0.0672120864 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
12 Hb_008959_010 0.0685415416 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005736_020 0.0702803154 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
14 Hb_002518_260 0.0714341479 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
15 Hb_000329_710 0.0737607704 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
16 Hb_001157_240 0.0738687987 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
17 Hb_003428_010 0.0753864063 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
18 Hb_002263_020 0.0754781027 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
19 Hb_019863_070 0.0757275964 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
20 Hb_001716_040 0.0761242687 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001304_110 Hb_001304_110 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_001008_120 Hb_001008_120 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_011386_010--Hb_002518_260 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_000049_210 Hb_000049_210 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_149985_010 Hb_149985_010 Hb_005054_110--Hb_149985_010 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2895 12.9932 10.2239 10.6869 8.87227 11.6379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3176 12.1728 13.8527 11.3139 17.0028

CAGE analysis