Hb_001304_120

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1304: 205133-206070
Sequence    

Annotation

kegg
ID rcu:RCOM_1120400
description WRKY transcription factor, putative
nr
ID AEE81757.1
description WRKY protein [Hevea brasiliensis]
swissprot
ID Q93WV0
description Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1
trembl
ID F6M7Y7
description WRKY protein OS=Hevea brasiliensis GN=WRKY1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001304_120 0.0 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
2 Hb_005007_040 0.2130757418 - - hypothetical protein VITISV_032357 [Vitis vinifera]
3 Hb_000144_040 0.2362030781 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
4 Hb_000065_050 0.2644512186 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_012295_020 0.2656919103 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
6 Hb_012071_010 0.2668303967 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_002092_040 0.268033597 - - PREDICTED: protein YLS3 [Jatropha curcas]
8 Hb_181026_010 0.2739408356 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_025311_020 0.2758285337 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
10 Hb_076795_010 0.2759201437 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
11 Hb_032531_010 0.2774945112 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_018609_030 0.2802185903 - - conserved hypothetical protein [Ricinus communis]
13 Hb_054127_050 0.2831273709 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
14 Hb_013691_050 0.2852430986 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
15 Hb_001006_240 0.2875508584 - - -
16 Hb_099990_010 0.2893678584 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
17 Hb_004212_040 0.2896362939 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_002571_090 0.2917254409 - - -
19 Hb_012098_190 0.2944209976 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_032496_010 0.2961958846 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]

Gene co-expression network

sample Hb_001304_120 Hb_001304_120 Hb_005007_040 Hb_005007_040 Hb_001304_120--Hb_005007_040 Hb_000144_040 Hb_000144_040 Hb_001304_120--Hb_000144_040 Hb_000065_050 Hb_000065_050 Hb_001304_120--Hb_000065_050 Hb_012295_020 Hb_012295_020 Hb_001304_120--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_001304_120--Hb_012071_010 Hb_002092_040 Hb_002092_040 Hb_001304_120--Hb_002092_040 Hb_005007_040--Hb_000065_050 Hb_001652_110 Hb_001652_110 Hb_005007_040--Hb_001652_110 Hb_000574_550 Hb_000574_550 Hb_005007_040--Hb_000574_550 Hb_005007_040--Hb_012071_010 Hb_005007_040--Hb_012295_020 Hb_001045_110 Hb_001045_110 Hb_000144_040--Hb_001045_110 Hb_001188_120 Hb_001188_120 Hb_000144_040--Hb_001188_120 Hb_076795_010 Hb_076795_010 Hb_000144_040--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_000144_040--Hb_012098_190 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030 Hb_000065_050--Hb_012071_010 Hb_000065_050--Hb_012295_020 Hb_000065_050--Hb_001652_110 Hb_002571_090 Hb_002571_090 Hb_000065_050--Hb_002571_090 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_012295_020--Hb_012071_010 Hb_012295_020--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012295_020--Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_012295_020--Hb_050334_010 Hb_155556_010 Hb_155556_010 Hb_012295_020--Hb_155556_010 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_001519_210 Hb_012071_010--Hb_155556_010 Hb_012071_010--Hb_050334_010 Hb_018609_030 Hb_018609_030 Hb_002092_040--Hb_018609_030 Hb_002092_040--Hb_155556_010 Hb_002092_040--Hb_012071_010 Hb_002092_040--Hb_012295_020 Hb_001780_010 Hb_001780_010 Hb_002092_040--Hb_001780_010 Hb_002092_040--Hb_001652_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100895 0 0.0699078 0.185575 0 0.173854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0811668 1.84129 1.06614 1.41022

CAGE analysis