Hb_001304_140

Information

Type -
Description -
Location Contig1304: 220665-226049
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16240g
description POPTRDRAFT_664862; hypothetical protein
nr
ID XP_012081429.1
description PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
swissprot
ID A4K526
description Transmembrane protein 256 homolog OS=Bufo gargarizans PE=3 SV=1
trembl
ID A0A067K0Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09068: 220811-226005 , PASA_asmbl_09070: 221163-221364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001304_140 0.0 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
2 Hb_076693_040 0.0767453846 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
3 Hb_002391_220 0.0881287461 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
4 Hb_010582_010 0.0967265268 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
5 Hb_054074_010 0.0985532161 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
6 Hb_001424_020 0.1095938053 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
7 Hb_000159_070 0.110471504 - - JHL03K20.4 [Jatropha curcas]
8 Hb_002609_210 0.1105320253 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
9 Hb_007441_300 0.1114326284 - - ATP binding protein, putative [Ricinus communis]
10 Hb_005211_190 0.1125231385 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
11 Hb_000365_080 0.1128005114 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
12 Hb_023386_010 0.1134105086 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
13 Hb_000062_390 0.1145988476 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
14 Hb_000260_200 0.1160434174 - - -
15 Hb_000069_140 0.117001106 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
16 Hb_000083_090 0.1177797424 - - immunophilin, putative [Ricinus communis]
17 Hb_001604_030 0.1181197659 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
18 Hb_000191_030 0.1184541648 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
19 Hb_000317_070 0.1212996019 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
20 Hb_000270_720 0.1215132233 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]

Gene co-expression network

sample Hb_001304_140 Hb_001304_140 Hb_076693_040 Hb_076693_040 Hb_001304_140--Hb_076693_040 Hb_002391_220 Hb_002391_220 Hb_001304_140--Hb_002391_220 Hb_010582_010 Hb_010582_010 Hb_001304_140--Hb_010582_010 Hb_054074_010 Hb_054074_010 Hb_001304_140--Hb_054074_010 Hb_001424_020 Hb_001424_020 Hb_001304_140--Hb_001424_020 Hb_000159_070 Hb_000159_070 Hb_001304_140--Hb_000159_070 Hb_076693_040--Hb_000159_070 Hb_076693_040--Hb_002391_220 Hb_009384_020 Hb_009384_020 Hb_076693_040--Hb_009384_020 Hb_000172_420 Hb_000172_420 Hb_076693_040--Hb_000172_420 Hb_000270_720 Hb_000270_720 Hb_076693_040--Hb_000270_720 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_000365_080 Hb_000365_080 Hb_010582_010--Hb_000365_080 Hb_010582_010--Hb_054074_010 Hb_005211_190 Hb_005211_190 Hb_010582_010--Hb_005211_190 Hb_002609_210 Hb_002609_210 Hb_010582_010--Hb_002609_210 Hb_010582_010--Hb_001424_020 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_001424_020--Hb_005211_190 Hb_001424_020--Hb_000260_200 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_001424_020--Hb_000069_140 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090 Hb_000159_070--Hb_009384_020 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1324 8.52546 29.7374 26.1796 23.1249 22.0049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.261 131.447 41.6576 21.774 23.0073

CAGE analysis