Hb_001304_150

Information

Type -
Description -
Location Contig1304: 227226-228099
Sequence    

Annotation

kegg
ID rcu:RCOM_0483880
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002531703.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0D4
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0483880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001304_150 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_154146_010 0.0028468845 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
3 Hb_000313_240 0.012006306 - - hypothetical protein RCOM_0377590 [Ricinus communis]
4 Hb_012090_010 0.0125366144 - - hypothetical protein RCOM_0904330 [Ricinus communis]
5 Hb_000331_600 0.0153626299 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
6 Hb_002092_050 0.0180655203 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
7 Hb_065272_010 0.0223228554 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
8 Hb_001278_010 0.0233398237 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000355_020 0.0257115053 - - -
10 Hb_000029_240 0.0274725826 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
11 Hb_025161_040 0.0340871489 - - kinase, putative [Ricinus communis]
12 Hb_020712_020 0.0349366143 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
13 Hb_025526_110 0.0437439653 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
14 Hb_002391_060 0.0455282314 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
15 Hb_051677_010 0.0463238719 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
16 Hb_041188_010 0.0470664475 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
17 Hb_007455_010 0.0499672443 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
18 Hb_002792_040 0.064895487 - - -
19 Hb_002281_030 0.069275402 - - -
20 Hb_002368_120 0.0696923334 - - hypothetical protein VITISV_033181 [Vitis vinifera]

Gene co-expression network

sample Hb_001304_150 Hb_001304_150 Hb_154146_010 Hb_154146_010 Hb_001304_150--Hb_154146_010 Hb_000313_240 Hb_000313_240 Hb_001304_150--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_001304_150--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_001304_150--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010 Hb_154146_010--Hb_000313_240 Hb_154146_010--Hb_012090_010 Hb_154146_010--Hb_000331_600 Hb_001278_010 Hb_001278_010 Hb_154146_010--Hb_001278_010 Hb_154146_010--Hb_002092_050 Hb_000313_240--Hb_012090_010 Hb_000313_240--Hb_000331_600 Hb_000313_240--Hb_002092_050 Hb_000313_240--Hb_065272_010 Hb_012090_010--Hb_000331_600 Hb_012090_010--Hb_002092_050 Hb_012090_010--Hb_065272_010 Hb_000029_240 Hb_000029_240 Hb_012090_010--Hb_000029_240 Hb_000331_600--Hb_002092_050 Hb_000331_600--Hb_065272_010 Hb_000331_600--Hb_000029_240 Hb_002092_050--Hb_065272_010 Hb_002092_050--Hb_000029_240 Hb_025161_040 Hb_025161_040 Hb_002092_050--Hb_025161_040 Hb_065272_010--Hb_000029_240 Hb_065272_010--Hb_025161_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.10731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.217364 0

CAGE analysis