Hb_001305_020

Information

Type -
Description -
Location Contig1305: 24442-39229
Sequence    

Annotation

kegg
ID cit:102623247
description uncharacterized LOC102623247
nr
ID XP_006474607.1
description PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
swissprot
ID Q9LDQ3
description Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=3
trembl
ID B9SC01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0701180 PE=4 SV=1
Gene Ontology
ID GO:0016772
description cysteine-rich rlk isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001305_020 0.0 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
2 Hb_000622_030 0.0580911916 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
3 Hb_005051_010 0.0623047738 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_002902_070 0.0783091418 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
5 Hb_005723_090 0.0844038635 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001158_250 0.0844110661 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000834_100 0.0861715659 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
8 Hb_000427_040 0.0920778135 - - Gibberellin receptor GID1, putative [Ricinus communis]
9 Hb_000069_540 0.0922261517 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
10 Hb_027892_050 0.1040032248 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
11 Hb_000120_480 0.1100419971 - - -
12 Hb_005183_100 0.1117692143 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
13 Hb_032779_010 0.1151779123 - - unnamed protein product [Vitis vinifera]
14 Hb_003226_230 0.1164185833 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
15 Hb_014700_030 0.1178805497 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_003858_060 0.1192281856 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
17 Hb_002168_070 0.1196836931 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
18 Hb_004204_220 0.1200328433 - - -
19 Hb_007103_020 0.1203491471 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
20 Hb_001232_040 0.1216900946 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]

Gene co-expression network

sample Hb_001305_020 Hb_001305_020 Hb_000622_030 Hb_000622_030 Hb_001305_020--Hb_000622_030 Hb_005051_010 Hb_005051_010 Hb_001305_020--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_001305_020--Hb_002902_070 Hb_005723_090 Hb_005723_090 Hb_001305_020--Hb_005723_090 Hb_001158_250 Hb_001158_250 Hb_001305_020--Hb_001158_250 Hb_000834_100 Hb_000834_100 Hb_001305_020--Hb_000834_100 Hb_000622_030--Hb_001158_250 Hb_000622_030--Hb_005723_090 Hb_000000_290 Hb_000000_290 Hb_000622_030--Hb_000000_290 Hb_001232_040 Hb_001232_040 Hb_000622_030--Hb_001232_040 Hb_005183_100 Hb_005183_100 Hb_000622_030--Hb_005183_100 Hb_000427_040 Hb_000427_040 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_000069_540 Hb_000069_540 Hb_002902_070--Hb_000069_540 Hb_000868_130 Hb_000868_130 Hb_002902_070--Hb_000868_130 Hb_002902_070--Hb_000427_040 Hb_002902_070--Hb_000834_100 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010 Hb_005723_090--Hb_005183_100 Hb_005057_030 Hb_005057_030 Hb_005723_090--Hb_005057_030 Hb_000120_480 Hb_000120_480 Hb_005723_090--Hb_000120_480 Hb_005723_090--Hb_001158_250 Hb_001158_250--Hb_000120_480 Hb_001158_250--Hb_001232_040 Hb_000271_130 Hb_000271_130 Hb_001158_250--Hb_000271_130 Hb_003858_060 Hb_003858_060 Hb_000834_100--Hb_003858_060 Hb_000834_100--Hb_000427_040 Hb_000834_100--Hb_000069_540 Hb_004204_220 Hb_004204_220 Hb_000834_100--Hb_004204_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.277999 0.143047 0.450829 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.080811 0.476264

CAGE analysis