Hb_001307_010

Information

Type -
Description -
Location Contig1307: 4122-4415
Sequence    

Annotation

kegg
ID pxb:103939917
description uncharacterized LOC103939917
nr
ID XP_009348290.1
description PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_010 0.0 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
2 Hb_167381_020 0.0819395866 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
3 Hb_000422_110 0.1029404878 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
4 Hb_031711_010 0.1030820241 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
5 Hb_009771_100 0.1058753899 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
6 Hb_011909_060 0.1059904383 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
7 Hb_001454_220 0.1089108822 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
8 Hb_000116_510 0.1144524423 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
9 Hb_000120_420 0.1193953246 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_000230_430 0.1194187875 - - catalytic, putative [Ricinus communis]
11 Hb_001243_060 0.1198275014 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
12 Hb_013749_020 0.1201738637 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
13 Hb_000538_010 0.1206125449 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
14 Hb_002902_020 0.1231088137 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
15 Hb_002073_280 0.1231101293 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
16 Hb_008406_040 0.1235712671 - - -
17 Hb_003228_030 0.123808727 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
18 Hb_001141_370 0.1246455464 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
19 Hb_178127_010 0.1282815889 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
20 Hb_000390_220 0.1308507336 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]

Gene co-expression network

sample Hb_001307_010 Hb_001307_010 Hb_167381_020 Hb_167381_020 Hb_001307_010--Hb_167381_020 Hb_000422_110 Hb_000422_110 Hb_001307_010--Hb_000422_110 Hb_031711_010 Hb_031711_010 Hb_001307_010--Hb_031711_010 Hb_009771_100 Hb_009771_100 Hb_001307_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_001307_010--Hb_011909_060 Hb_001454_220 Hb_001454_220 Hb_001307_010--Hb_001454_220 Hb_000116_510 Hb_000116_510 Hb_167381_020--Hb_000116_510 Hb_000120_420 Hb_000120_420 Hb_167381_020--Hb_000120_420 Hb_118840_050 Hb_118840_050 Hb_167381_020--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_167381_020--Hb_000336_110 Hb_167381_020--Hb_011909_060 Hb_013749_020 Hb_013749_020 Hb_000422_110--Hb_013749_020 Hb_007813_030 Hb_007813_030 Hb_000422_110--Hb_007813_030 Hb_002073_280 Hb_002073_280 Hb_000422_110--Hb_002073_280 Hb_030827_060 Hb_030827_060 Hb_000422_110--Hb_030827_060 Hb_000574_510 Hb_000574_510 Hb_000422_110--Hb_000574_510 Hb_000544_060 Hb_000544_060 Hb_000422_110--Hb_000544_060 Hb_031711_010--Hb_009771_100 Hb_031711_010--Hb_011909_060 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_000457_050 Hb_000457_050 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_000363_280 Hb_000363_280 Hb_011909_060--Hb_000363_280 Hb_011909_060--Hb_000120_420 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49817 16.473 7.36396 4.9504 11.4594 8.09466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15275 2.79526 1.74765 2.02237 2.84308

CAGE analysis