Hb_001307_040

Information

Type -
Description -
Location Contig1307: 15253-20288
Sequence    

Annotation

kegg
ID tcc:TCM_003963
description Polyadenylate-binding protein 2-binding protein 2
nr
ID XP_012085269.1
description PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NEN6
description Arginine--tRNA ligase OS=Gossypium arboreum GN=F383_17368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09088: 15327-17209 , PASA_asmbl_09090: 18858-20296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_040 0.0 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
2 Hb_008092_050 0.1106282718 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
3 Hb_008092_060 0.1335076187 - - -
4 Hb_005271_160 0.1419335981 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
5 Hb_001408_030 0.1466129991 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
6 Hb_003900_030 0.148186614 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
7 Hb_000395_090 0.1614924287 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
8 Hb_143629_060 0.1629078321 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
9 Hb_002016_010 0.1644674139 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
10 Hb_001959_240 0.1644811405 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_002276_070 0.1676759628 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
12 Hb_005618_150 0.1687631427 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
13 Hb_005529_030 0.1690347968 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
14 Hb_015531_030 0.1693873777 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010488_010 0.1722186753 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
16 Hb_001437_120 0.1733062391 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
17 Hb_006911_070 0.1735178128 - - 50S ribosomal protein L1p, putative [Ricinus communis]
18 Hb_005534_030 0.1752174711 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
19 Hb_000084_280 0.1765453835 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_004254_100 0.1778033058 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_040 Hb_001307_040 Hb_008092_050 Hb_008092_050 Hb_001307_040--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001307_040--Hb_008092_060 Hb_005271_160 Hb_005271_160 Hb_001307_040--Hb_005271_160 Hb_001408_030 Hb_001408_030 Hb_001307_040--Hb_001408_030 Hb_003900_030 Hb_003900_030 Hb_001307_040--Hb_003900_030 Hb_000395_090 Hb_000395_090 Hb_001307_040--Hb_000395_090 Hb_008092_050--Hb_001408_030 Hb_008092_050--Hb_008092_060 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001437_120 Hb_001437_120 Hb_008092_050--Hb_001437_120 Hb_006911_070 Hb_006911_070 Hb_008092_050--Hb_006911_070 Hb_008092_060--Hb_001408_030 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_005271_160--Hb_008092_050 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_005883_020 Hb_005883_020 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_000053_120 Hb_000053_120 Hb_000395_090--Hb_000053_120 Hb_072212_010 Hb_072212_010 Hb_000395_090--Hb_072212_010 Hb_003427_080 Hb_003427_080 Hb_000395_090--Hb_003427_080 Hb_000395_090--Hb_005618_150 Hb_007313_060 Hb_007313_060 Hb_000395_090--Hb_007313_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.34891 4.85767 11.0417 2.01597 7.06546 8.00979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26946 1.64096 0.541121 1.46896 20.3153

CAGE analysis