Hb_001307_050

Information

Type -
Description -
Location Contig1307: 44813-47897
Sequence    

Annotation

kegg
ID rcu:RCOM_0543240
description oligopeptide transporter, putative
nr
ID XP_012085263.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
swissprot
ID Q9FNL7
description Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana GN=NPF5.2 PE=2 SV=1
trembl
ID A0A067K3U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17647 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09091: 45046-47853 , PASA_asmbl_09092: 45421-45817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_050 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
2 Hb_000179_010 0.0451197516 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
3 Hb_000497_050 0.0492933667 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
4 Hb_029991_010 0.0522440314 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
5 Hb_146255_030 0.0532076078 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
6 Hb_004837_010 0.0534860765 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
7 Hb_004338_050 0.0603104625 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
8 Hb_002752_020 0.0628861988 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
9 Hb_002534_020 0.0638725917 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
10 Hb_004032_400 0.064876085 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
11 Hb_001277_350 0.0659227957 - - early light-induced protein, putative [Ricinus communis]
12 Hb_000046_400 0.0695487298 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000251_150 0.0705072121 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_116349_020 0.0711208886 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
15 Hb_004607_110 0.0733418893 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
16 Hb_004452_070 0.0769482957 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
17 Hb_028491_010 0.0774507601 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
18 Hb_033187_010 0.0780208102 - - epoxide hydrolase, putative [Ricinus communis]
19 Hb_131466_010 0.0787588041 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_158001_010 0.0793339241 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]

Gene co-expression network

sample Hb_001307_050 Hb_001307_050 Hb_000179_010 Hb_000179_010 Hb_001307_050--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_001307_050--Hb_000497_050 Hb_029991_010 Hb_029991_010 Hb_001307_050--Hb_029991_010 Hb_146255_030 Hb_146255_030 Hb_001307_050--Hb_146255_030 Hb_004837_010 Hb_004837_010 Hb_001307_050--Hb_004837_010 Hb_004338_050 Hb_004338_050 Hb_001307_050--Hb_004338_050 Hb_000179_010--Hb_004837_010 Hb_000251_150 Hb_000251_150 Hb_000179_010--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000179_010--Hb_158001_010 Hb_000046_400 Hb_000046_400 Hb_000179_010--Hb_000046_400 Hb_000179_010--Hb_029991_010 Hb_002752_020 Hb_002752_020 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_004338_050 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_131466_010 Hb_131466_010 Hb_029991_010--Hb_131466_010 Hb_004607_110 Hb_004607_110 Hb_029991_010--Hb_004607_110 Hb_028491_010 Hb_028491_010 Hb_029991_010--Hb_028491_010 Hb_029991_010--Hb_000497_050 Hb_004032_400 Hb_004032_400 Hb_146255_030--Hb_004032_400 Hb_146255_030--Hb_002752_020 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_146255_030--Hb_001277_350 Hb_004837_010--Hb_004032_400 Hb_004837_010--Hb_158001_010 Hb_085682_010 Hb_085682_010 Hb_004837_010--Hb_085682_010 Hb_004837_010--Hb_146255_030 Hb_004338_050--Hb_002752_020 Hb_001999_230 Hb_001999_230 Hb_004338_050--Hb_001999_230 Hb_008225_050 Hb_008225_050 Hb_004338_050--Hb_008225_050 Hb_004338_050--Hb_146255_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.40882 51.1255 41.0226 0 0.0162752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0389756 0.0153343 0 0.0304675 113.609

CAGE analysis