Hb_001307_090

Information

Type -
Description -
Location Contig1307: 81733-85661
Sequence    

Annotation

kegg
ID cic:CICLE_v10021950mg
description hypothetical protein
nr
ID KDO60400.1
description hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID V4TU58
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021950mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09098: 81683-85648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_090 0.0 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
2 Hb_000122_020 0.0734255114 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
3 Hb_004336_050 0.0763235271 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
4 Hb_000975_110 0.0766993933 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
5 Hb_124755_010 0.0774967916 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
6 Hb_000024_030 0.0804990907 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
7 Hb_004449_200 0.087827151 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
8 Hb_001427_230 0.0879575961 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004374_140 0.0889809285 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
10 Hb_008511_110 0.0902852818 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
11 Hb_000722_040 0.0904591954 - - -
12 Hb_003561_030 0.0939161305 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
13 Hb_000224_120 0.0947946776 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
14 Hb_002631_020 0.0958802086 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
15 Hb_008544_010 0.1003379961 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
16 Hb_004659_060 0.101560903 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_011457_090 0.1030055078 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
18 Hb_000635_150 0.1032974563 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
19 Hb_000672_120 0.1038544353 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
20 Hb_007926_060 0.1060388962 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]

Gene co-expression network

sample Hb_001307_090 Hb_001307_090 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_001307_090--Hb_000975_110 Hb_124755_010 Hb_124755_010 Hb_001307_090--Hb_124755_010 Hb_000024_030 Hb_000024_030 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_000122_020--Hb_004449_200 Hb_002631_020 Hb_002631_020 Hb_000122_020--Hb_002631_020 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_001461_010 Hb_001461_010 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_124755_010--Hb_000024_030 Hb_002471_080 Hb_002471_080 Hb_124755_010--Hb_002471_080 Hb_124755_010--Hb_004374_140 Hb_124755_010--Hb_000975_110 Hb_124755_010--Hb_000122_020 Hb_000024_030--Hb_001433_050 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_000024_030--Hb_002471_080 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_004449_200--Hb_001461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.90649 1.71148 2.21895 12.9457 5.84727 13.9283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3245 24.3931 19.4445 10.5651 4.48736

CAGE analysis