Hb_001307_100

Information

Type -
Description -
Location Contig1307: 89874-95668
Sequence    

Annotation

kegg
ID rcu:RCOM_0543410
description calmodulin binding protein, putative
nr
ID XP_002526575.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID B9SKQ6
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0543410 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tetratricopeptide repeat protein 7a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09099: 89924-95456
cDNA
(Sanger)
(ID:Location)		 030_L02.ab1: 92710-95454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_100 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_002075_030 0.0748341607 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
3 Hb_000579_040 0.0836993364 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
4 Hb_068804_090 0.0859997357 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
5 Hb_000088_260 0.0864468013 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
6 Hb_032631_070 0.0887306754 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
7 Hb_138585_030 0.0889787928 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
8 Hb_030736_040 0.0949513714 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_004629_030 0.0997670874 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_055690_010 0.1009456048 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_005305_020 0.1014359297 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
12 Hb_001105_100 0.1020505973 - - PREDICTED: cathepsin B [Jatropha curcas]
13 Hb_002150_020 0.1028379116 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001143_100 0.1031101712 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
15 Hb_008375_010 0.1037204836 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_000116_250 0.1038192426 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
17 Hb_025194_050 0.1042400338 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
18 Hb_003994_080 0.104977794 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
19 Hb_001221_300 0.1058185344 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
20 Hb_000748_090 0.1059089611 - - glucose inhibited division protein A, putative [Ricinus communis]

Gene co-expression network

sample Hb_001307_100 Hb_001307_100 Hb_002075_030 Hb_002075_030 Hb_001307_100--Hb_002075_030 Hb_000579_040 Hb_000579_040 Hb_001307_100--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_001307_100--Hb_068804_090 Hb_000088_260 Hb_000088_260 Hb_001307_100--Hb_000088_260 Hb_032631_070 Hb_032631_070 Hb_001307_100--Hb_032631_070 Hb_138585_030 Hb_138585_030 Hb_001307_100--Hb_138585_030 Hb_002075_030--Hb_032631_070 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_000579_040--Hb_032631_070 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_000579_040--Hb_138585_030 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_000748_090 Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_001269_620 Hb_001269_620 Hb_000088_260--Hb_001269_620 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240 Hb_032631_070--Hb_007441_310 Hb_002150_020 Hb_002150_020 Hb_032631_070--Hb_002150_020 Hb_032631_070--Hb_138585_030 Hb_000585_110 Hb_000585_110 Hb_032631_070--Hb_000585_110 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_138585_030--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24749 4.72059 8.98248 5.69782 1.10475 2.5141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3356 2.86312 2.81794 3.91463 12.2774

CAGE analysis