Hb_001307_150

Information

Type -
Description -
Location Contig1307: 136793-150475
Sequence    

Annotation

kegg
ID rcu:RCOM_0542960
description receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002526561.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID B9SKP2
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0542960 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09103: 136843-138604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_150 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_000856_390 0.0497152993 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000480_060 0.0522768182 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
4 Hb_016898_020 0.05895469 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
5 Hb_001699_270 0.0646758896 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
6 Hb_003847_060 0.0683081785 - - syntaxin, putative [Ricinus communis]
7 Hb_000345_450 0.072823147 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
8 Hb_009113_060 0.073753704 - - conserved hypothetical protein [Ricinus communis]
9 Hb_080952_060 0.0789131091 - - PREDICTED: patellin-4 [Populus euphratica]
10 Hb_001390_040 0.0803094876 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
11 Hb_001950_090 0.0820021791 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
12 Hb_000085_360 0.0821194379 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
13 Hb_005276_090 0.0833824373 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_000116_050 0.0852335274 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
15 Hb_101133_050 0.0854664948 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
16 Hb_005398_050 0.0868686548 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
17 Hb_000038_070 0.08759986 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_120 0.0895862014 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
19 Hb_003368_070 0.0909234352 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
20 Hb_001998_180 0.0926182671 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001307_150 Hb_001307_150 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_001307_150--Hb_000480_060 Hb_016898_020 Hb_016898_020 Hb_001307_150--Hb_016898_020 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000480_060--Hb_000345_450 Hb_000480_060--Hb_000085_360 Hb_016898_020--Hb_009113_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_000317_120 Hb_000317_120 Hb_016898_020--Hb_000317_120 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001950_090 Hb_001950_090 Hb_001699_270--Hb_001950_090 Hb_001699_270--Hb_003847_060 Hb_001699_270--Hb_000345_450 Hb_005398_050 Hb_005398_050 Hb_003847_060--Hb_005398_050 Hb_003847_060--Hb_001950_090 Hb_003847_060--Hb_000856_390 Hb_003847_060--Hb_000480_060 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_000345_450--Hb_001950_090 Hb_000345_450--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0469201 0.172973 7.76477 4.75242 0 0.0163265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00836031 0.0197386 0.0253415 0.648283 0.395958

CAGE analysis