Hb_001307_180

Information

Type -
Description -
Location Contig1307: 152321-158100
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000641mg
description hypothetical protein
nr
ID XP_012085255.1
description PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
swissprot
ID Q84JA6
description Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1
trembl
ID M5VVD4
description Cellulose synthase OS=Prunus persica GN=PRUPE_ppa000641mg PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09104: 152055-157882 , PASA_asmbl_09105: 157285-157400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_180 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
2 Hb_011912_010 0.0283101239 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_003645_040 0.0479213944 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
4 Hb_012633_020 0.0480273494 - - laccase, putative [Ricinus communis]
5 Hb_070771_010 0.0489199647 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
6 Hb_002660_180 0.0528514794 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000836_640 0.0579820614 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
8 Hb_004846_110 0.0626883468 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
9 Hb_000413_030 0.0629739538 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
10 Hb_000037_150 0.0655507207 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
11 Hb_002750_030 0.0678078133 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
12 Hb_002085_060 0.0704315867 - - conserved hypothetical protein [Ricinus communis]
13 Hb_024074_030 0.0705094567 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
14 Hb_064047_020 0.0706425557 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
15 Hb_001477_050 0.0718469476 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_001051_060 0.0734615471 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
17 Hb_000964_080 0.0745972917 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
18 Hb_000696_130 0.0748573776 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000422_090 0.0779507007 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006065_030 0.0799124911 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_180 Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_001307_180--Hb_011912_010 Hb_003645_040 Hb_003645_040 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_070771_010 Hb_070771_010 Hb_001307_180--Hb_070771_010 Hb_002660_180 Hb_002660_180 Hb_001307_180--Hb_002660_180 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640 Hb_000413_030 Hb_000413_030 Hb_011912_010--Hb_000413_030 Hb_011912_010--Hb_070771_010 Hb_000037_150 Hb_000037_150 Hb_011912_010--Hb_000037_150 Hb_011912_010--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_011912_010--Hb_064047_020 Hb_002085_060 Hb_002085_060 Hb_003645_040--Hb_002085_060 Hb_003645_040--Hb_012633_020 Hb_003645_040--Hb_070771_010 Hb_003645_040--Hb_064047_020 Hb_012633_020--Hb_070771_010 Hb_006065_030 Hb_006065_030 Hb_012633_020--Hb_006065_030 Hb_012633_020--Hb_011912_010 Hb_042083_010 Hb_042083_010 Hb_012633_020--Hb_042083_010 Hb_070771_010--Hb_002085_060 Hb_000339_060 Hb_000339_060 Hb_070771_010--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_070771_010--Hb_003638_020 Hb_000696_130 Hb_000696_130 Hb_002660_180--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_002660_180--Hb_002636_170 Hb_024074_030 Hb_024074_030 Hb_002660_180--Hb_024074_030 Hb_002660_180--Hb_000037_150 Hb_000422_090 Hb_000422_090 Hb_002660_180--Hb_000422_090 Hb_001477_050 Hb_001477_050 Hb_000836_640--Hb_001477_050 Hb_000776_090 Hb_000776_090 Hb_000836_640--Hb_000776_090 Hb_002750_030 Hb_002750_030 Hb_000836_640--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_000836_640--Hb_000162_010 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0303526 4.94829 4.52235 145.623 0.0506994 0.0747636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.026277 0.0206785 0.0396152 0.389375 63.6135

CAGE analysis