Hb_001307_210

Information

Type -
Description -
Location Contig1307: 182602-184873
Sequence    

Annotation

kegg
ID dosa:Os03t0139100-00
description Os03g0139100; Similar to Ribosomal Pr 117 (Fragment).
nr
ID NP_001048495.1
description Os02g0814700 [Oryza sativa Japonica Group]
swissprot
ID P49690
description 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3
trembl
ID A0A0E0IT77
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0005739
description 60s ribosomal protein l23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09114: 182215-184905 , PASA_asmbl_09115: 183268-183635 , PASA_asmbl_09116: 182820-183037
cDNA
(Sanger)
(ID:Location)		 004_M21.ab1: 182664-184898 , 025_G16.ab1: 182691-184889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_210 0.0 - - Os02g0814700 [Oryza sativa Japonica Group]
2 Hb_001449_090 0.0773504923 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
3 Hb_011377_020 0.0942375081 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
4 Hb_103118_020 0.1131222822 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
5 Hb_003020_330 0.1145370472 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
6 Hb_006588_080 0.1203533949 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
7 Hb_012395_130 0.1210052552 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_001240_020 0.1212338291 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
9 Hb_000110_170 0.1244904173 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000302_290 0.1280327641 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
11 Hb_000878_020 0.1297846165 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_000454_180 0.1310471779 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
13 Hb_044653_060 0.1331628233 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
14 Hb_001085_270 0.1347388399 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_062135_020 0.138404833 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
16 Hb_000599_280 0.1386379234 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_002909_130 0.1393595385 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_004735_050 0.1394204588 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_008748_020 0.1399543687 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
20 Hb_001369_170 0.1406442534 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001307_210 Hb_001307_210 Hb_001449_090 Hb_001449_090 Hb_001307_210--Hb_001449_090 Hb_011377_020 Hb_011377_020 Hb_001307_210--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_001307_210--Hb_103118_020 Hb_003020_330 Hb_003020_330 Hb_001307_210--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_001307_210--Hb_006588_080 Hb_012395_130 Hb_012395_130 Hb_001307_210--Hb_012395_130 Hb_001225_010 Hb_001225_010 Hb_001449_090--Hb_001225_010 Hb_002909_130 Hb_002909_130 Hb_001449_090--Hb_002909_130 Hb_001449_090--Hb_012395_130 Hb_001449_090--Hb_011377_020 Hb_000878_020 Hb_000878_020 Hb_001449_090--Hb_000878_020 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_004007_180 Hb_004007_180 Hb_011377_020--Hb_004007_180 Hb_005914_200 Hb_005914_200 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_002518_290 Hb_002518_290 Hb_103118_020--Hb_002518_290 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_103118_020--Hb_011377_020 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_012395_130--Hb_004754_070 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_012395_130--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0933 13.6195 42.7011 78.1891 35.6133 58.2501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.011 660.285 155.038 157.156 91.6629

CAGE analysis