Hb_001307_220

Information

Type -
Description -
Location Contig1307: 193794-195370
Sequence    

Annotation

kegg
ID rcu:RCOM_0542790
description glutathione transferase, putative
nr
ID XP_012085246.1
description PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
swissprot
ID P42620
description Glutathionyl-hydroquinone reductase YqjG OS=Escherichia coli (strain K12) GN=yqjG PE=1 SV=1
trembl
ID A0A067JUI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17636 PE=4 SV=1
Gene Ontology
ID GO:0009407
description glutathione s-transferase omega-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09117: 193828-195315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_220 0.0 - - PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
2 Hb_000317_050 0.0672452588 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
3 Hb_005116_160 0.0707084394 transcription factor TF Family: TRAF -
4 Hb_000318_250 0.0853825065 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
5 Hb_001546_080 0.0873733599 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
6 Hb_000684_470 0.0915006238 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
7 Hb_002184_110 0.0934656655 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
8 Hb_000025_640 0.0954940616 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
9 Hb_001123_260 0.0974560954 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
10 Hb_002592_060 0.0980707025 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008221_180 0.0988387246 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
12 Hb_007590_020 0.0989107658 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
13 Hb_002893_070 0.0999725603 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
14 Hb_002739_050 0.1000277645 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
15 Hb_008554_130 0.1001314844 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
16 Hb_005496_130 0.1008859919 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
17 Hb_007163_070 0.1018893233 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
18 Hb_000261_020 0.1022091721 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
19 Hb_007416_340 0.1031525048 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000699_030 0.1039972242 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_220 Hb_001307_220 Hb_000317_050 Hb_000317_050 Hb_001307_220--Hb_000317_050 Hb_005116_160 Hb_005116_160 Hb_001307_220--Hb_005116_160 Hb_000318_250 Hb_000318_250 Hb_001307_220--Hb_000318_250 Hb_001546_080 Hb_001546_080 Hb_001307_220--Hb_001546_080 Hb_000684_470 Hb_000684_470 Hb_001307_220--Hb_000684_470 Hb_002184_110 Hb_002184_110 Hb_001307_220--Hb_002184_110 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_000317_050--Hb_001546_080 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000317_050--Hb_000318_250 Hb_002263_020 Hb_002263_020 Hb_000317_050--Hb_002263_020 Hb_005116_160--Hb_000684_470 Hb_000699_030 Hb_000699_030 Hb_005116_160--Hb_000699_030 Hb_000732_010 Hb_000732_010 Hb_005116_160--Hb_000732_010 Hb_001369_730 Hb_001369_730 Hb_005116_160--Hb_001369_730 Hb_005463_100 Hb_005463_100 Hb_005116_160--Hb_005463_100 Hb_000318_250--Hb_001546_080 Hb_000130_410 Hb_000130_410 Hb_000318_250--Hb_000130_410 Hb_000868_090 Hb_000868_090 Hb_000318_250--Hb_000868_090 Hb_000318_250--Hb_000732_010 Hb_000318_250--Hb_000329_710 Hb_003030_060 Hb_003030_060 Hb_001546_080--Hb_003030_060 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_092462_020 Hb_092462_020 Hb_002184_110--Hb_092462_020 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_003142_030 Hb_003142_030 Hb_002184_110--Hb_003142_030 Hb_002184_110--Hb_006478_040 Hb_000729_030 Hb_000729_030 Hb_002184_110--Hb_000729_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.22796 11.2872 9.43706 7.40107 14.9045 10.0048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7807 14.819 9.29416 7.96219 15.194

CAGE analysis