Hb_001310_010

Information

Type -
Description -
Location Contig1310: 21422-29069
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09790g
description plasma membrane Ca2+-ATPase family protein
nr
ID XP_012079402.1
description PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
swissprot
ID O81108
description Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1
trembl
ID A0A067K750
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_12532 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09127: 21403-22533 , PASA_asmbl_09129: 21446-29126 , PASA_asmbl_09130: 28519-28736 , PASA_asmbl_09131: 23950-24097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_010 0.0 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
2 Hb_001999_170 0.0813485059 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
3 Hb_120011_010 0.0966274117 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_002960_100 0.0977978892 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
5 Hb_004612_020 0.1031546375 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
6 Hb_164146_020 0.1105671587 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_010964_010 0.1140336716 - - -
8 Hb_006615_060 0.1151055824 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000172_410 0.1166457918 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_007858_020 0.1207940994 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_000959_240 0.1227634678 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_001619_140 0.1232673911 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_008202_020 0.1266368869 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000627_130 0.1270472724 - - Polcalcin Jun o, putative [Ricinus communis]
15 Hb_004899_010 0.1278190581 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
16 Hb_005054_330 0.1282161046 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
17 Hb_001153_250 0.1343280911 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
18 Hb_010126_030 0.1347567207 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
19 Hb_074672_010 0.1399354816 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_061908_030 0.1416033218 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]

Gene co-expression network

sample Hb_001310_010 Hb_001310_010 Hb_001999_170 Hb_001999_170 Hb_001310_010--Hb_001999_170 Hb_120011_010 Hb_120011_010 Hb_001310_010--Hb_120011_010 Hb_002960_100 Hb_002960_100 Hb_001310_010--Hb_002960_100 Hb_004612_020 Hb_004612_020 Hb_001310_010--Hb_004612_020 Hb_164146_020 Hb_164146_020 Hb_001310_010--Hb_164146_020 Hb_010964_010 Hb_010964_010 Hb_001310_010--Hb_010964_010 Hb_001999_170--Hb_010964_010 Hb_000336_060 Hb_000336_060 Hb_001999_170--Hb_000336_060 Hb_010126_030 Hb_010126_030 Hb_001999_170--Hb_010126_030 Hb_005054_330 Hb_005054_330 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020 Hb_074672_010 Hb_074672_010 Hb_120011_010--Hb_074672_010 Hb_001619_140 Hb_001619_140 Hb_120011_010--Hb_001619_140 Hb_077694_010 Hb_077694_010 Hb_120011_010--Hb_077694_010 Hb_008202_020 Hb_008202_020 Hb_120011_010--Hb_008202_020 Hb_006615_060 Hb_006615_060 Hb_120011_010--Hb_006615_060 Hb_002960_100--Hb_010126_030 Hb_002960_100--Hb_001999_170 Hb_061908_030 Hb_061908_030 Hb_002960_100--Hb_061908_030 Hb_000059_260 Hb_000059_260 Hb_002960_100--Hb_000059_260 Hb_002960_100--Hb_004612_020 Hb_004899_010 Hb_004899_010 Hb_004612_020--Hb_004899_010 Hb_000164_160 Hb_000164_160 Hb_004612_020--Hb_000164_160 Hb_005381_010 Hb_005381_010 Hb_004612_020--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_004612_020--Hb_000069_530 Hb_000627_130 Hb_000627_130 Hb_004612_020--Hb_000627_130 Hb_164146_020--Hb_006615_060 Hb_164146_020--Hb_008202_020 Hb_164146_020--Hb_120011_010 Hb_086614_010 Hb_086614_010 Hb_164146_020--Hb_086614_010 Hb_002311_160 Hb_002311_160 Hb_164146_020--Hb_002311_160 Hb_010964_010--Hb_007858_020 Hb_000808_090 Hb_000808_090 Hb_010964_010--Hb_000808_090 Hb_010964_010--Hb_000627_130 Hb_010964_010--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04259 123.378 98.6667 22.1002 0.70024 1.50443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.499416 0.78603 0.602769 2.866 10.8852

CAGE analysis