Hb_001310_020

Information

Type -
Description -
Location Contig1310: 32789-34224
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09820g
description cyclin family protein
nr
ID XP_012079400.1
description PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
swissprot
ID Q2V3B2
description Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2
trembl
ID U5G4S0
description Cyclin family protein OS=Populus trichocarpa GN=POPTR_0007s09820g PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d5-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09136: 32782-33207 , PASA_asmbl_09137: 33383-34221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_020 0.0 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
2 Hb_001191_060 0.0380501716 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
3 Hb_002818_130 0.0438995459 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001269_480 0.0548766212 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
5 Hb_011381_120 0.0575217052 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
6 Hb_001348_160 0.0646938236 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_000221_130 0.0684189561 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
8 Hb_002809_030 0.0690425225 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010697_020 0.0694960399 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000251_160 0.0704100577 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_000012_370 0.0706452246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005483_050 0.0708390492 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003090_050 0.0718499129 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
14 Hb_004807_040 0.0734308573 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
15 Hb_003033_020 0.0735643173 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
16 Hb_008748_050 0.0743156096 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
17 Hb_086022_020 0.0752869786 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
18 Hb_000923_030 0.0762747406 - - F-box family protein [Populus trichocarpa]
19 Hb_010812_030 0.0775864959 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000029_150 0.0806480896 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001310_020 Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_001310_020--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001310_020--Hb_002818_130 Hb_001269_480 Hb_001269_480 Hb_001310_020--Hb_001269_480 Hb_011381_120 Hb_011381_120 Hb_001310_020--Hb_011381_120 Hb_001348_160 Hb_001348_160 Hb_001310_020--Hb_001348_160 Hb_000221_130 Hb_000221_130 Hb_001310_020--Hb_000221_130 Hb_001191_060--Hb_001348_160 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_002818_130--Hb_001269_480 Hb_002818_130--Hb_011381_120 Hb_002818_130--Hb_001348_160 Hb_002809_030 Hb_002809_030 Hb_002818_130--Hb_002809_030 Hb_001269_480--Hb_000221_130 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_009093_020 Hb_009093_020 Hb_011381_120--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_011381_120--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_011381_120--Hb_000111_460 Hb_003090_050 Hb_003090_050 Hb_011381_120--Hb_003090_050 Hb_010697_020 Hb_010697_020 Hb_001348_160--Hb_010697_020 Hb_001348_160--Hb_002809_030 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_007044_020 Hb_007044_020 Hb_000221_130--Hb_007044_020 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_010812_030 Hb_010812_030 Hb_000221_130--Hb_010812_030 Hb_000221_130--Hb_001191_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206544 4.33391 2.44571 0 0.0249513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0651879 15.1522

CAGE analysis