Hb_001310_060

Information

Type -
Description -
Location Contig1310: 94104-96504
Sequence    

Annotation

kegg
ID rcu:RCOM_0579610
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002525263.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID B9SGZ4
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0579610 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09139: 94106-94215 , PASA_asmbl_09140: 94220-96458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_060 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_001284_070 0.0550985753 - - conserved hypothetical protein [Ricinus communis]
3 Hb_080147_070 0.0795965503 - - Rop5 [Hevea brasiliensis]
4 Hb_004607_020 0.0806442505 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
5 Hb_000205_180 0.0814221919 - - lipoxygenase, putative [Ricinus communis]
6 Hb_002700_030 0.0827052628 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
7 Hb_000077_300 0.0907524217 - - PREDICTED: expansin-B3-like [Jatropha curcas]
8 Hb_000359_180 0.0914826473 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003626_020 0.0990632455 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
10 Hb_004832_010 0.0991122082 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_550 0.1046183189 - - 21 kDa protein precursor, putative [Ricinus communis]
12 Hb_002757_010 0.1047325445 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
13 Hb_006615_220 0.1068036418 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
14 Hb_002081_060 0.1082020208 - - cyclin d, putative [Ricinus communis]
15 Hb_002217_060 0.1090122219 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
16 Hb_000343_010 0.1111175153 - - F3F9.11 [Arabidopsis thaliana]
17 Hb_005743_010 0.1115959692 - - RING/U-box superfamily protein, putative [Theobroma cacao]
18 Hb_000941_010 0.1182718875 - - hypothetical protein RCOM_0504460 [Ricinus communis]
19 Hb_062807_010 0.1210138816 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
20 Hb_020273_010 0.1231631828 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001310_060 Hb_001310_060 Hb_001284_070 Hb_001284_070 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001310_060--Hb_004607_020 Hb_000205_180 Hb_000205_180 Hb_001310_060--Hb_000205_180 Hb_002700_030 Hb_002700_030 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_001284_070--Hb_080147_070 Hb_001284_070--Hb_004607_020 Hb_001284_070--Hb_002700_030 Hb_001284_070--Hb_000205_180 Hb_001369_550 Hb_001369_550 Hb_001284_070--Hb_001369_550 Hb_080147_070--Hb_002700_030 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_080147_070--Hb_001369_550 Hb_080147_070--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_004607_020--Hb_003626_020 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_000205_180--Hb_002700_030 Hb_002700_030--Hb_000077_300 Hb_002700_030--Hb_002757_010 Hb_003902_070 Hb_003902_070 Hb_002700_030--Hb_003902_070 Hb_000077_300--Hb_002757_010 Hb_000077_300--Hb_003902_070 Hb_000077_300--Hb_080147_070 Hb_000077_300--Hb_000205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0729112 2.35403 37.9117 15.775 0.102284 0.0170593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0221506 0 0 10.9817 9.06551

CAGE analysis