Hb_001310_110

Information

Type -
Description -
Location Contig1310: 148500-152105
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09950g
description hypothetical protein
nr
ID CDP02590.1
description unnamed protein product [Coffea canephora]
swissprot
ID O64816
description Casein kinase II subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g23070 PE=2 SV=1
trembl
ID A0A068U220
description Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00040025001 PE=4 SV=1
Gene Ontology
ID GO:0004672
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09147: 148295-148519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_110 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000933_020 0.0842449863 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009775_020 0.0949583749 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
4 Hb_000123_090 0.0972088353 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
5 Hb_000592_080 0.0981433369 - - PREDICTED: thymidylate kinase [Jatropha curcas]
6 Hb_000025_050 0.1016668405 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
7 Hb_000959_270 0.1016919844 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
8 Hb_003018_060 0.1027591832 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
9 Hb_003124_220 0.1048277671 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
10 Hb_000640_220 0.1052229781 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
11 Hb_001347_040 0.1067376282 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
12 Hb_025669_020 0.1086293593 - - conserved hypothetical protein [Ricinus communis]
13 Hb_143395_010 0.1099417625 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
14 Hb_000212_320 0.1103011122 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
15 Hb_075481_030 0.1112621277 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
16 Hb_007059_010 0.111611666 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
17 Hb_002400_470 0.111635792 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_008864_110 0.1121520919 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_003605_130 0.1122499071 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
20 Hb_000787_090 0.1130299345 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_001310_110 Hb_001310_110 Hb_000933_020 Hb_000933_020 Hb_001310_110--Hb_000933_020 Hb_009775_020 Hb_009775_020 Hb_001310_110--Hb_009775_020 Hb_000123_090 Hb_000123_090 Hb_001310_110--Hb_000123_090 Hb_000592_080 Hb_000592_080 Hb_001310_110--Hb_000592_080 Hb_000025_050 Hb_000025_050 Hb_001310_110--Hb_000025_050 Hb_000959_270 Hb_000959_270 Hb_001310_110--Hb_000959_270 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_007059_010 Hb_007059_010 Hb_009775_020--Hb_007059_010 Hb_004310_150 Hb_004310_150 Hb_009775_020--Hb_004310_150 Hb_040262_010 Hb_040262_010 Hb_009775_020--Hb_040262_010 Hb_005618_160 Hb_005618_160 Hb_009775_020--Hb_005618_160 Hb_010712_030 Hb_010712_030 Hb_009775_020--Hb_010712_030 Hb_000960_060 Hb_000960_060 Hb_009775_020--Hb_000960_060 Hb_000123_090--Hb_008864_110 Hb_000123_090--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_000123_090--Hb_002400_470 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030 Hb_000592_080--Hb_008864_110 Hb_000592_080--Hb_002400_470 Hb_001348_050 Hb_001348_050 Hb_000592_080--Hb_001348_050 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000710_020 Hb_000710_020 Hb_000592_080--Hb_000710_020 Hb_076874_010 Hb_076874_010 Hb_000025_050--Hb_076874_010 Hb_106411_010 Hb_106411_010 Hb_000025_050--Hb_106411_010 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_003925_070 Hb_003925_070 Hb_000025_050--Hb_003925_070 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4092 28.7286 32.1189 46.3758 79.1351 56.4872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3155 41.6595 27.56 18.7845 12.3927

CAGE analysis