Hb_001313_010

Information

Type -
Description -
Location Contig1313: 64361-69900
Sequence    

Annotation

kegg
ID tcc:TCM_033345
description DNA/RNA polymerases superfamily protein
nr
ID CAA73042.1
description polyprotein [Ananas comosus]
swissprot
ID A6NKG5
description Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3
trembl
ID O64892
description Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001313_010 0.0 - - polyprotein [Ananas comosus]
2 Hb_007467_020 0.0621329919 - - -
3 Hb_002019_010 0.2555960355 - - -
4 Hb_178389_010 0.2872459252 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
5 Hb_005671_030 0.2877565431 - - -
6 Hb_019654_120 0.2974805572 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
7 Hb_142068_020 0.3062991766 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
8 Hb_000454_020 0.3063942365 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_000656_130 0.3070104827 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
10 Hb_001676_030 0.3131829945 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000089_150 0.3170237934 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
12 Hb_049014_010 0.3227003628 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_187661_010 0.3305411139 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
14 Hb_075481_010 0.3345811428 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
15 Hb_122567_010 0.3443923543 - - -
16 Hb_001488_050 0.3450944081 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
17 Hb_101040_010 0.3476038002 - - -
18 Hb_002495_020 0.3486480952 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
19 Hb_008891_020 0.350892169 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
20 Hb_056305_010 0.3509291091 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001313_010 Hb_001313_010 Hb_007467_020 Hb_007467_020 Hb_001313_010--Hb_007467_020 Hb_002019_010 Hb_002019_010 Hb_001313_010--Hb_002019_010 Hb_178389_010 Hb_178389_010 Hb_001313_010--Hb_178389_010 Hb_005671_030 Hb_005671_030 Hb_001313_010--Hb_005671_030 Hb_019654_120 Hb_019654_120 Hb_001313_010--Hb_019654_120 Hb_142068_020 Hb_142068_020 Hb_001313_010--Hb_142068_020 Hb_007467_020--Hb_178389_010 Hb_007467_020--Hb_019654_120 Hb_000656_130 Hb_000656_130 Hb_007467_020--Hb_000656_130 Hb_000454_020 Hb_000454_020 Hb_007467_020--Hb_000454_020 Hb_007467_020--Hb_142068_020 Hb_002333_030 Hb_002333_030 Hb_002019_010--Hb_002333_030 Hb_000089_150 Hb_000089_150 Hb_002019_010--Hb_000089_150 Hb_002019_010--Hb_007467_020 Hb_000724_030 Hb_000724_030 Hb_002019_010--Hb_000724_030 Hb_092855_030 Hb_092855_030 Hb_002019_010--Hb_092855_030 Hb_122567_010 Hb_122567_010 Hb_178389_010--Hb_122567_010 Hb_178389_010--Hb_019654_120 Hb_178389_010--Hb_000656_130 Hb_178389_010--Hb_000454_020 Hb_178389_010--Hb_142068_020 Hb_001676_030 Hb_001676_030 Hb_178389_010--Hb_001676_030 Hb_187661_010 Hb_187661_010 Hb_005671_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_005671_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_005671_030--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_005671_030--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_005671_030--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_005671_030--Hb_003985_020 Hb_019654_120--Hb_122567_010 Hb_123104_010 Hb_123104_010 Hb_019654_120--Hb_123104_010 Hb_000395_100 Hb_000395_100 Hb_019654_120--Hb_000395_100 Hb_017111_010 Hb_017111_010 Hb_019654_120--Hb_017111_010 Hb_142068_020--Hb_000454_020 Hb_142068_020--Hb_000656_130 Hb_049014_010 Hb_049014_010 Hb_142068_020--Hb_049014_010 Hb_075481_010 Hb_075481_010 Hb_142068_020--Hb_075481_010 Hb_142068_020--Hb_122567_010 Hb_142068_020--Hb_187661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.011999 0 0 0 0 0.00423681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00342802 0

CAGE analysis