Hb_001314_040

Information

Type -
Description -
Location Contig1314: 199468-203969
Sequence    

Annotation

kegg
ID tcc:TCM_032142
description Nodulin MtN3 family protein isoform 1
nr
ID XP_006377713.1
description hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
swissprot
ID Q9LH79
description Bidirectional sugar transporter SWEET2 OS=Arabidopsis thaliana GN=SWEET2 PE=2 SV=1
trembl
ID U5FWM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10470g PE=4 SV=1
Gene Ontology
ID GO:0005887
description bidirectional sugar transporter sweet2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09169: 199593-203888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_040 0.0 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
2 Hb_006569_100 0.0581189325 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
3 Hb_001157_010 0.0703633366 - - deoxyhypusine synthase, putative [Ricinus communis]
4 Hb_020419_020 0.0752506735 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_000802_100 0.0832507984 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
6 Hb_000224_140 0.0850577634 - - ribonuclease z, chloroplast, putative [Ricinus communis]
7 Hb_068056_030 0.0850839894 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
8 Hb_000181_300 0.085712718 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
9 Hb_000530_070 0.0859854519 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
10 Hb_000012_100 0.0879086058 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
11 Hb_001172_120 0.0951758106 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
12 Hb_000417_260 0.0959134793 - - protein with unknown function [Ricinus communis]
13 Hb_002374_390 0.0963027479 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
14 Hb_005278_040 0.0967464094 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
15 Hb_000193_120 0.0968707577 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
16 Hb_000069_700 0.0979023358 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
17 Hb_007192_100 0.0982454183 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
18 Hb_000103_010 0.098479328 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
19 Hb_032969_030 0.0987955333 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_000115_230 0.098975764 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001314_040 Hb_001314_040 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_006569_100--Hb_020419_020 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_020419_020--Hb_001008_090 Hb_004449_200 Hb_004449_200 Hb_020419_020--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_020419_020--Hb_005663_120 Hb_020419_020--Hb_068056_030 Hb_000802_100--Hb_002876_120 Hb_000802_100--Hb_001157_010 Hb_000802_100--Hb_000530_070 Hb_003579_030 Hb_003579_030 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_068056_030--Hb_001512_080 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37052 3.51205 9.79128 11.1953 5.89922 7.38976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3466 40.8419 33.5101 9.26895 7.36651

CAGE analysis