Hb_001314_100

Information

Type -
Description -
Location Contig1314: 243605-258893
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01820g
description hypothetical protein
nr
ID XP_006368344.1
description hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
swissprot
ID Q9C9G6
description MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2
trembl
ID U5GMX3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09178: 243661-245426 , PASA_asmbl_09179: 246988-247436 , PASA_asmbl_09180: 247778-248428 , PASA_asmbl_09181: 248520-248879 , PASA_asmbl_09182: 249157-249450 , PASA_asmbl_09183: 249669-258838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_100 0.0 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
2 Hb_012573_070 0.0648254499 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001369_640 0.0713792138 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
4 Hb_168054_010 0.0719409832 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
5 Hb_165132_010 0.0728915496 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_000029_200 0.0730919813 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
7 Hb_134949_020 0.0773219923 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
8 Hb_012368_020 0.0795080458 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
9 Hb_002518_050 0.0798353419 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
10 Hb_003687_110 0.0799560511 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
11 Hb_002864_050 0.0809797537 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
12 Hb_000526_040 0.0840264403 - - 60S ribosomal protein L6, putative [Ricinus communis]
13 Hb_003641_020 0.0850459216 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
14 Hb_001279_310 0.0864196749 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
15 Hb_003939_080 0.087016069 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000690_180 0.0880491174 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
17 Hb_005496_030 0.0883472263 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
18 Hb_018133_060 0.0889486087 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
19 Hb_000012_220 0.0889696727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_144598_020 0.091046772 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001314_100 Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_134949_020 Hb_134949_020 Hb_001314_100--Hb_134949_020 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000152_420 Hb_000152_420 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_002289_120 Hb_002289_120 Hb_001369_640--Hb_002289_120 Hb_001369_640--Hb_134949_020 Hb_010180_020 Hb_010180_020 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_001604_080 Hb_001604_080 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_168054_010--Hb_165132_010 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_000029_200--Hb_002864_050 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_003893_050 Hb_003893_050 Hb_000029_200--Hb_003893_050 Hb_000029_200--Hb_012573_070 Hb_007416_030 Hb_007416_030 Hb_000029_200--Hb_007416_030 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_134949_020--Hb_002864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2719 9.61277 15.2959 13.2914 13.9017 28.3277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.44 54.4656 23.6581 9.33462 5.95774

CAGE analysis