Hb_001315_020

Information

Type -
Description -
Location Contig1315: 67736-69582
Sequence    

Annotation

kegg
ID rcu:RCOM_0319990
description ring finger protein, putative
nr
ID XP_002533989.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q940Q4
description RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2
trembl
ID B9T6X0
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0319990 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09185: 67167-69460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001315_020 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_055335_010 0.0978031256 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
3 Hb_002027_300 0.1099016027 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
4 Hb_006120_200 0.1104502309 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
5 Hb_006070_010 0.1105472645 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
6 Hb_001141_470 0.1122220761 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
7 Hb_001140_160 0.1209695274 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_005455_070 0.1222233845 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
9 Hb_004724_040 0.1231471167 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
10 Hb_010872_060 0.1237566012 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
11 Hb_000957_040 0.1270255705 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
12 Hb_012347_010 0.1310023361 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
13 Hb_002928_110 0.1323515686 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
14 Hb_002326_030 0.1375460693 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
15 Hb_116349_150 0.13876056 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_001478_050 0.1388419855 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
17 Hb_007766_010 0.1413759025 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
18 Hb_000258_430 0.1416015716 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_000762_020 0.1419071794 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
20 Hb_002291_030 0.1432571273 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]

Gene co-expression network

sample Hb_001315_020 Hb_001315_020 Hb_055335_010 Hb_055335_010 Hb_001315_020--Hb_055335_010 Hb_002027_300 Hb_002027_300 Hb_001315_020--Hb_002027_300 Hb_006120_200 Hb_006120_200 Hb_001315_020--Hb_006120_200 Hb_006070_010 Hb_006070_010 Hb_001315_020--Hb_006070_010 Hb_001141_470 Hb_001141_470 Hb_001315_020--Hb_001141_470 Hb_001140_160 Hb_001140_160 Hb_001315_020--Hb_001140_160 Hb_055335_010--Hb_001141_470 Hb_055335_010--Hb_006070_010 Hb_005455_070 Hb_005455_070 Hb_055335_010--Hb_005455_070 Hb_055335_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_055335_010--Hb_000957_040 Hb_012347_010 Hb_012347_010 Hb_002027_300--Hb_012347_010 Hb_002027_300--Hb_000957_040 Hb_002027_300--Hb_001140_160 Hb_002027_300--Hb_006120_200 Hb_010872_060 Hb_010872_060 Hb_002027_300--Hb_010872_060 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_006120_200--Hb_006070_010 Hb_006120_200--Hb_000957_040 Hb_007766_010 Hb_007766_010 Hb_006070_010--Hb_007766_010 Hb_006070_010--Hb_000481_020 Hb_006070_010--Hb_000762_020 Hb_001141_470--Hb_005455_070 Hb_012522_030 Hb_012522_030 Hb_001141_470--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_001141_470--Hb_002326_030 Hb_010174_120 Hb_010174_120 Hb_001141_470--Hb_010174_120 Hb_000419_040 Hb_000419_040 Hb_001141_470--Hb_000419_040 Hb_001140_160--Hb_000957_040 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.8441 1.93829 3.34171 6.81861 11.8445 27.3644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3047 27.0959 40.9454 3.73777 1.15288

CAGE analysis