Hb_001318_030

Information

Type -
Description -
Location Contig1318: 43125-48370
Sequence    

Annotation

kegg
ID rcu:RCOM_1343910
description hypothetical protein
nr
ID XP_012082981.1
description PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
swissprot
ID Q9Y4F3
description Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6
trembl
ID A0A067JWI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14097 PE=4 SV=1
Gene Ontology
ID GO:0005777
description endonuclease or glycosyl hydrolase with c2h2-type zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09193: 42848-47096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_030 0.0 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
2 Hb_000237_080 0.0870781902 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
3 Hb_004032_270 0.0872822273 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_012807_050 0.099925983 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
5 Hb_004128_060 0.1023796463 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
6 Hb_009838_050 0.1038397671 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000976_150 0.1055177016 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
8 Hb_001610_110 0.1065771941 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
9 Hb_001073_070 0.1068356382 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
10 Hb_005843_100 0.1072886205 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
11 Hb_005396_050 0.1081069761 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
12 Hb_004129_130 0.1098219414 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_023827_040 0.1102515018 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
14 Hb_000554_020 0.1106448845 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
15 Hb_006949_050 0.112038469 - - unknown [Lotus japonicus]
16 Hb_008959_030 0.1143942181 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
17 Hb_005307_030 0.1145008842 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
18 Hb_002374_310 0.1168242731 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
19 Hb_005306_130 0.1178890248 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_010710_110 0.1179966418 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001318_030 Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_002813_050 Hb_002813_050 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_004032_270--Hb_009838_050 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_004032_270--Hb_012807_050 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_000554_020 Hb_000554_020 Hb_004128_060--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_004128_060--Hb_000406_220 Hb_000032_290 Hb_000032_290 Hb_004128_060--Hb_000032_290 Hb_005357_030 Hb_005357_030 Hb_004128_060--Hb_005357_030 Hb_181235_010 Hb_181235_010 Hb_004128_060--Hb_181235_010 Hb_006949_040 Hb_006949_040 Hb_004128_060--Hb_006949_040 Hb_009838_050--Hb_076693_020 Hb_009838_050--Hb_012807_050 Hb_045793_010 Hb_045793_010 Hb_009838_050--Hb_045793_010 Hb_002435_110 Hb_002435_110 Hb_009838_050--Hb_002435_110 Hb_025557_010 Hb_025557_010 Hb_000976_150--Hb_025557_010 Hb_000953_010 Hb_000953_010 Hb_000976_150--Hb_000953_010 Hb_156850_030 Hb_156850_030 Hb_000976_150--Hb_156850_030 Hb_001584_160 Hb_001584_160 Hb_000976_150--Hb_001584_160 Hb_001817_180 Hb_001817_180 Hb_000976_150--Hb_001817_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9983 35.1402 4.69958 5.43459 19.5961 31.004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5389 27.2859 25.7825 9.86081 4.93308

CAGE analysis