Hb_001318_060

Information

Type -
Description -
Location Contig1318: 62633-63412
Sequence    

Annotation

kegg
ID sbi:SORBI_03g006485
description SORBIDRAFT_03g006485, Sb03g006485; hypothetical protein
nr
ID AAC13594.1
description contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID O65246
description F21E10.8 protein OS=Arabidopsis thaliana GN=F21E10.8 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rnase h domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_060 0.0 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
2 Hb_010435_010 0.0086392014 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_111985_030 0.0166341002 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_004566_050 0.0170495656 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003410_020 0.0381767865 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_034909_010 0.0382935037 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000417_330 0.0532280771 - - -
8 Hb_008576_010 0.0594855221 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_149253_010 0.0637177224 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
10 Hb_003943_060 0.0645032049 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
11 Hb_012438_020 0.0658302304 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001383_040 0.0662373676 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
13 Hb_071998_010 0.0664501906 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
14 Hb_011888_010 0.0704146734 - - Receptor like protein 46, putative [Theobroma cacao]
15 Hb_127835_030 0.0841303259 - - -
16 Hb_160879_010 0.0931106145 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
17 Hb_004553_010 0.0968652055 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
18 Hb_185467_040 0.0969695205 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_003766_020 0.1027781186 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
20 Hb_144813_010 0.1030071531 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_001318_060 Hb_001318_060 Hb_010435_010 Hb_010435_010 Hb_001318_060--Hb_010435_010 Hb_111985_030 Hb_111985_030 Hb_001318_060--Hb_111985_030 Hb_004566_050 Hb_004566_050 Hb_001318_060--Hb_004566_050 Hb_003410_020 Hb_003410_020 Hb_001318_060--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_001318_060--Hb_034909_010 Hb_000417_330 Hb_000417_330 Hb_001318_060--Hb_000417_330 Hb_010435_010--Hb_111985_030 Hb_010435_010--Hb_004566_050 Hb_010435_010--Hb_000417_330 Hb_010435_010--Hb_003410_020 Hb_010435_010--Hb_034909_010 Hb_111985_030--Hb_004566_050 Hb_111985_030--Hb_003410_020 Hb_111985_030--Hb_034909_010 Hb_071998_010 Hb_071998_010 Hb_111985_030--Hb_071998_010 Hb_004566_050--Hb_003410_020 Hb_004566_050--Hb_034909_010 Hb_004566_050--Hb_071998_010 Hb_003410_020--Hb_034909_010 Hb_003410_020--Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_003410_020--Hb_011888_010 Hb_034909_010--Hb_071998_010 Hb_034909_010--Hb_011888_010 Hb_008576_010 Hb_008576_010 Hb_000417_330--Hb_008576_010 Hb_149253_010 Hb_149253_010 Hb_000417_330--Hb_149253_010 Hb_003943_060 Hb_003943_060 Hb_000417_330--Hb_003943_060 Hb_012438_020 Hb_012438_020 Hb_000417_330--Hb_012438_020 Hb_001383_040 Hb_001383_040 Hb_000417_330--Hb_001383_040 Hb_127835_030 Hb_127835_030 Hb_000417_330--Hb_127835_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106653 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.148651

CAGE analysis