Hb_001318_070

Information

Type transcription factor
Description TF Family: SBP
Location Contig1318: 72252-92441
Sequence    

Annotation

kegg
ID rcu:RCOM_1343940
description hypothetical protein
nr
ID XP_002515202.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SMX9
description Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2
trembl
ID B9RN63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343940 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09196: 72397-92478 , PASA_asmbl_09197: 72397-92478 , PASA_asmbl_09198: 72397-92497 , PASA_asmbl_09199: 72397-92497 , PASA_asmbl_09200: 72397-92497 , PASA_asmbl_09201: 72397-92497 , PASA_asmbl_09202: 74698-81296 , PASA_asmbl_09203: 87290-88010 , PASA_asmbl_09204: 86006-86725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_070 0.0 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
2 Hb_000243_210 0.0282058146 - - protein with unknown function [Ricinus communis]
3 Hb_000879_040 0.0500191801 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
4 Hb_000099_040 0.0571178529 - - unnamed protein product [Coffea canephora]
5 Hb_000174_060 0.0625387197 - - zinc finger family protein [Populus trichocarpa]
6 Hb_001268_280 0.0641855502 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002205_250 0.0646993141 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
8 Hb_000671_070 0.0655802503 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
9 Hb_001322_130 0.06583177 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
10 Hb_001277_300 0.0692670312 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
11 Hb_000949_020 0.0703927884 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
12 Hb_005402_040 0.0709918582 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
13 Hb_000035_170 0.0713213199 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
14 Hb_012055_110 0.0718298386 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
15 Hb_001191_120 0.0720022774 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
16 Hb_003124_160 0.0721013554 - - dynamin, putative [Ricinus communis]
17 Hb_031042_050 0.0723894426 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
18 Hb_000866_460 0.0728699766 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
19 Hb_004429_010 0.0732537773 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_002027_280 0.0738972639 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_070 Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_001318_070--Hb_000243_210 Hb_000879_040 Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_000099_040 Hb_000099_040 Hb_001318_070--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_002205_250 Hb_002205_250 Hb_001318_070--Hb_002205_250 Hb_000243_210--Hb_000099_040 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_000243_210--Hb_002205_250 Hb_000243_210--Hb_000879_040 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_029977_040 Hb_029977_040 Hb_000099_040--Hb_029977_040 Hb_001673_050 Hb_001673_050 Hb_000099_040--Hb_001673_050 Hb_001279_120 Hb_001279_120 Hb_000099_040--Hb_001279_120 Hb_001534_210 Hb_001534_210 Hb_000099_040--Hb_001534_210 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_001268_280--Hb_000243_210 Hb_105105_010 Hb_105105_010 Hb_002205_250--Hb_105105_010 Hb_003835_070 Hb_003835_070 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4101 30.5412 23.9076 19.6628 23.8572 23.3496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5248 10.1102 15.896 19.5203 26.1306

CAGE analysis