Hb_001318_100

Information

Type -
Description -
Location Contig1318: 93125-96081
Sequence    

Annotation

kegg
ID rcu:RCOM_1343960
description s-adenosylmethionine synthetase, putative (EC:2.5.1.6)
nr
ID XP_002515204.1
description s-adenosylmethionine synthetase, putative [Ricinus communis]
swissprot
ID A9P822
description S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1
trembl
ID B9RN65
description S-adenosylmethionine synthase OS=Ricinus communis GN=RCOM_1343960 PE=3 SV=1
Gene Ontology
ID GO:0004478
description s-adenosylmethionine synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09207: 93232-96072 , PASA_asmbl_09209: 94745-96061 , PASA_asmbl_09210: 94745-96061
cDNA
(Sanger)
(ID:Location)		 012_E10.ab1: 94040-96067 , 035_F24.ab1: 94037-96072 , 038_N09.ab1: 94022-96072 , 039_K20.ab1: 94241-96064 , 045_B03.ab1: 94092-96072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_100 0.0 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
2 Hb_003266_090 0.0950968754 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
3 Hb_010222_040 0.1013120705 - - PREDICTED: kinesin-2 [Jatropha curcas]
4 Hb_009113_080 0.104177993 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
5 Hb_000659_040 0.1068397632 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
6 Hb_003125_210 0.1128773327 - - Phospholipase C 4 precursor, putative [Ricinus communis]
7 Hb_000856_200 0.1138205231 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
8 Hb_001946_200 0.114663709 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
9 Hb_007894_070 0.1196249031 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
10 Hb_004241_110 0.1209967521 - - Minor allergen Alt a, putative [Ricinus communis]
11 Hb_010557_020 0.1210069087 - - Mlo protein [Hevea brasiliensis]
12 Hb_000429_160 0.1214842761 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
13 Hb_022092_110 0.1215120805 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
14 Hb_003929_230 0.122603893 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
15 Hb_002311_280 0.1262779938 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_152980_020 0.1273733863 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
17 Hb_002838_010 0.1276805382 - - AGPase large subunit protein [Hevea brasiliensis]
18 Hb_002740_100 0.1284736833 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_003147_040 0.1287759492 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
20 Hb_001054_040 0.1287825283 - - hypothetical protein JCGZ_25310 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_100 Hb_001318_100 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_000659_040 Hb_000659_040 Hb_001318_100--Hb_000659_040 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_000856_200 Hb_000856_200 Hb_001318_100--Hb_000856_200 Hb_002311_280 Hb_002311_280 Hb_003266_090--Hb_002311_280 Hb_022092_110 Hb_022092_110 Hb_003266_090--Hb_022092_110 Hb_003581_050 Hb_003581_050 Hb_003266_090--Hb_003581_050 Hb_002518_220 Hb_002518_220 Hb_003266_090--Hb_002518_220 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_010222_040--Hb_000856_200 Hb_010557_020 Hb_010557_020 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_144449_010 Hb_144449_010 Hb_010222_040--Hb_144449_010 Hb_000333_030 Hb_000333_030 Hb_010222_040--Hb_000333_030 Hb_001946_200 Hb_001946_200 Hb_009113_080--Hb_001946_200 Hb_001085_190 Hb_001085_190 Hb_009113_080--Hb_001085_190 Hb_000977_030 Hb_000977_030 Hb_009113_080--Hb_000977_030 Hb_000005_360 Hb_000005_360 Hb_009113_080--Hb_000005_360 Hb_009113_080--Hb_003125_210 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_003125_210--Hb_010222_040 Hb_000856_200--Hb_010557_020 Hb_000856_200--Hb_000290_030 Hb_000473_100 Hb_000473_100 Hb_000856_200--Hb_000473_100 Hb_001046_030 Hb_001046_030 Hb_000856_200--Hb_001046_030 Hb_000856_200--Hb_144449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0488 257.969 374.164 715.863 8.32774 7.27278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6466 10.078 17.0499 159.484 427.205

CAGE analysis