Hb_001318_140

Information

Type -
Description -
Location Contig1318: 122915-126098
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11090g
description POPTRDRAFT_1098924; hypothetical protein
nr
ID XP_012082966.1
description PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
swissprot
ID Q3EAF9
description Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1
trembl
ID A0A067JWR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14083 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 49

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09216: 122903-126017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_140 0.0 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
2 Hb_007382_100 0.0656723794 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_000087_100 0.1024653466 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
4 Hb_006052_060 0.104186822 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_001619_160 0.1104586987 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
6 Hb_065525_010 0.1136397408 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
7 Hb_149484_010 0.1191423795 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
8 Hb_009476_110 0.1225110069 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_001242_190 0.1249980312 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_001294_050 0.1289775758 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
11 Hb_003430_070 0.1315757203 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
12 Hb_005080_020 0.1335516147 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
13 Hb_178658_010 0.1351539047 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
14 Hb_172676_010 0.1356898325 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
15 Hb_001049_160 0.1362751408 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_014720_050 0.1366653126 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
17 Hb_001226_170 0.1369895591 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_001102_200 0.1369905249 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
19 Hb_005375_070 0.1374329266 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
20 Hb_005000_050 0.1383415698 - - PREDICTED: tetraspanin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_140 Hb_001318_140 Hb_007382_100 Hb_007382_100 Hb_001318_140--Hb_007382_100 Hb_000087_100 Hb_000087_100 Hb_001318_140--Hb_000087_100 Hb_006052_060 Hb_006052_060 Hb_001318_140--Hb_006052_060 Hb_001619_160 Hb_001619_160 Hb_001318_140--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_001226_170 Hb_001226_170 Hb_000087_100--Hb_001226_170 Hb_002849_110 Hb_002849_110 Hb_000087_100--Hb_002849_110 Hb_000836_210 Hb_000836_210 Hb_000087_100--Hb_000836_210 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_006052_060--Hb_001619_160 Hb_006052_060--Hb_003430_070 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_006052_060--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190 Hb_001619_160--Hb_001242_190 Hb_001619_160--Hb_065525_010 Hb_001049_160 Hb_001049_160 Hb_001619_160--Hb_001049_160 Hb_065525_010--Hb_001242_190 Hb_013405_100 Hb_013405_100 Hb_065525_010--Hb_013405_100 Hb_065525_010--Hb_006052_060 Hb_065525_010--Hb_149484_010 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_149484_010--Hb_003430_070 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_000402_030 Hb_000402_030 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76614 61.8745 25.6427 31.8641 2.56568 2.38011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02729 5.57897 4.57483 13.3412 19.302

CAGE analysis