Hb_001318_160

Information

Type -
Description -
Location Contig1318: 137651-139666
Sequence    

Annotation

kegg
ID rcu:RCOM_1345110
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002515219.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID B9RN80
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1345110 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase at1g48100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_160 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_002362_010 0.1334032252 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
3 Hb_144649_010 0.1662128178 - - 60S ribosomal protein L34A [Hevea brasiliensis]
4 Hb_184109_010 0.1739699393 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
5 Hb_000866_350 0.1762244988 - - -
6 Hb_000896_130 0.1925057299 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
7 Hb_000756_030 0.200535045 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_007017_050 0.2020230802 - - conserved hypothetical protein [Ricinus communis]
9 Hb_108744_010 0.2093773742 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_152528_010 0.2112618026 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_011224_090 0.2119144237 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
12 Hb_001190_030 0.2126189835 - - hypothetical protein VITISV_017115 [Vitis vinifera]
13 Hb_168241_010 0.2139887321 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
14 Hb_113974_010 0.2170902556 - - DNA binding protein, putative [Ricinus communis]
15 Hb_001322_220 0.2179379113 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
16 Hb_000654_060 0.2184854752 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
17 Hb_169136_010 0.2187222631 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022845_010 0.2187608516 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
19 Hb_006142_020 0.2205030038 - - JHL25P11.12 [Jatropha curcas]
20 Hb_002837_120 0.2217827497 - - PREDICTED: legumin A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001318_160 Hb_001318_160 Hb_002362_010 Hb_002362_010 Hb_001318_160--Hb_002362_010 Hb_144649_010 Hb_144649_010 Hb_001318_160--Hb_144649_010 Hb_184109_010 Hb_184109_010 Hb_001318_160--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_001318_160--Hb_000866_350 Hb_000896_130 Hb_000896_130 Hb_001318_160--Hb_000896_130 Hb_000756_030 Hb_000756_030 Hb_001318_160--Hb_000756_030 Hb_002362_010--Hb_144649_010 Hb_002362_010--Hb_000756_030 Hb_000654_060 Hb_000654_060 Hb_002362_010--Hb_000654_060 Hb_152528_010 Hb_152528_010 Hb_002362_010--Hb_152528_010 Hb_108744_010 Hb_108744_010 Hb_002362_010--Hb_108744_010 Hb_022845_010 Hb_022845_010 Hb_002362_010--Hb_022845_010 Hb_005649_070 Hb_005649_070 Hb_144649_010--Hb_005649_070 Hb_144649_010--Hb_108744_010 Hb_144649_010--Hb_000756_030 Hb_004241_140 Hb_004241_140 Hb_144649_010--Hb_004241_140 Hb_144649_010--Hb_152528_010 Hb_168241_010 Hb_168241_010 Hb_184109_010--Hb_168241_010 Hb_184109_010--Hb_000866_350 Hb_007017_050 Hb_007017_050 Hb_184109_010--Hb_007017_050 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_000866_350--Hb_168241_010 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_011063_040 Hb_000866_350--Hb_000896_130 Hb_002613_030 Hb_002613_030 Hb_000896_130--Hb_002613_030 Hb_000896_130--Hb_144649_010 Hb_003762_010 Hb_003762_010 Hb_000896_130--Hb_003762_010 Hb_002486_090 Hb_002486_090 Hb_000896_130--Hb_002486_090 Hb_000083_110 Hb_000083_110 Hb_000896_130--Hb_000083_110 Hb_000756_030--Hb_152528_010 Hb_000756_030--Hb_108744_010 Hb_000756_030--Hb_000654_060 Hb_006142_020 Hb_006142_020 Hb_000756_030--Hb_006142_020 Hb_000756_030--Hb_004241_140 Hb_001398_110 Hb_001398_110 Hb_000756_030--Hb_001398_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.013217 0.305688 0.120693 0.0266178 0.0116459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis