Hb_001318_250

Information

Type -
Description -
Location Contig1318: 214103-216762
Sequence    

Annotation

kegg
ID tcc:TCM_046693
description hypothetical protein
nr
ID XP_012082958.1
description PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K920
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14075 PE=4 SV=1
Gene Ontology
ID GO:0005829
description PREDICTED: uncharacterized protein LOC105642666

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09225: 214048-216853 , PASA_asmbl_09227: 214195-216853 , PASA_asmbl_09228: 216238-216440
cDNA
(Sanger)
(ID:Location)		 001_B15.ab1: 214048-216853 , 009_K21.ab1: 214195-216792 , 011_G08.ab1: 214217-216841 , 018_A18.ab1: 214205-216853 , 026_K12.ab1: 214195-216849 , 031_A18.ab1: 214113-216821 , 032_G04r.ab1: 217158-220453

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_250 0.0 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
2 Hb_000934_250 0.0461437559 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
3 Hb_001124_090 0.0555668259 - - acyl carrier protein, putative [Ricinus communis]
4 Hb_152784_010 0.0645776611 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
5 Hb_000317_390 0.066955582 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
6 Hb_000103_320 0.0730256627 - - Stem-specific protein TSJT1, putative [Ricinus communis]
7 Hb_001016_030 0.0751180223 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
8 Hb_003126_090 0.0828782052 - - Rop1 [Hevea brasiliensis]
9 Hb_010042_010 0.0836115469 - - Urease accessory protein ureD, putative [Ricinus communis]
10 Hb_003581_150 0.0881750377 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
11 Hb_006059_050 0.0882370595 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_026314_020 0.0885205809 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
13 Hb_000638_250 0.0885691224 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001047_240 0.0888092921 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
15 Hb_000982_090 0.0888095248 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
16 Hb_065525_020 0.0889992513 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
17 Hb_000331_200 0.0899372509 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
18 Hb_004108_070 0.0903572565 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
19 Hb_000826_100 0.0904468576 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
20 Hb_000201_120 0.0906787322 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]

Gene co-expression network

sample Hb_001318_250 Hb_001318_250 Hb_000934_250 Hb_000934_250 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_152784_010 Hb_152784_010 Hb_001318_250--Hb_152784_010 Hb_000317_390 Hb_000317_390 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_065525_020 Hb_065525_020 Hb_000934_250--Hb_065525_020 Hb_000934_250--Hb_152784_010 Hb_010042_010 Hb_010042_010 Hb_000934_250--Hb_010042_010 Hb_000982_090 Hb_000982_090 Hb_001124_090--Hb_000982_090 Hb_001124_090--Hb_000934_250 Hb_006059_050 Hb_006059_050 Hb_001124_090--Hb_006059_050 Hb_001124_090--Hb_000317_390 Hb_002601_110 Hb_002601_110 Hb_001124_090--Hb_002601_110 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_152784_010--Hb_000317_390 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_000103_320--Hb_003581_150 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_001140_370 Hb_001140_370 Hb_001016_030--Hb_001140_370 Hb_001616_040 Hb_001616_040 Hb_001016_030--Hb_001616_040 Hb_000201_120 Hb_000201_120 Hb_001016_030--Hb_000201_120 Hb_001421_060 Hb_001421_060 Hb_001016_030--Hb_001421_060 Hb_001016_030--Hb_003126_090 Hb_002830_020 Hb_002830_020 Hb_001016_030--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1041 31.3252 74.8593 103.738 57.6372 82.224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.83 145.82 99.382 42.2923 46.4296

CAGE analysis