Hb_001318_260

Information

Type -
Description -
Location Contig1318: 216970-220460
Sequence    

Annotation

kegg
ID pmum:103327282
description nitrogen regulatory protein P-II homolog
nr
ID XP_012082957.1
description PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
swissprot
ID Q9ZST4
description Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana GN=GLB1 PE=1 SV=1
trembl
ID A0A067JZV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14074 PE=3 SV=1
Gene Ontology
ID GO:0030234
description nitrogen regulatory protein p-ii homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09229: 216970-220526 , PASA_asmbl_09230: 217619-218274 , PASA_asmbl_09231: 219307-219464
cDNA
(Sanger)
(ID:Location)		 018_A18r.ab1: 214195-216849 , 032_G04.ab1: 216971-220295

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_260 0.0 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
2 Hb_018133_020 0.0731681599 - - transporter, putative [Ricinus communis]
3 Hb_131181_010 0.080497169 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
4 Hb_001279_080 0.0806469931 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
5 Hb_002540_080 0.0865170933 - - cysteine-type peptidase, putative [Ricinus communis]
6 Hb_002872_050 0.0885406101 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
7 Hb_000160_180 0.0905779505 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
8 Hb_011512_070 0.090732815 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_011689_120 0.0922204886 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
10 Hb_007827_010 0.092680498 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
11 Hb_003077_020 0.0954448055 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000431_070 0.0976612603 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
13 Hb_001604_060 0.0981434962 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
14 Hb_001427_200 0.0989612493 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
15 Hb_001322_110 0.0994606372 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003124_150 0.1002034428 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
17 Hb_000012_250 0.1008244317 - - hypothetical protein L484_019524 [Morus notabilis]
18 Hb_002226_060 0.1022509911 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
19 Hb_012114_070 0.1036795726 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
20 Hb_003849_150 0.1045142602 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_260 Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001279_080 Hb_001279_080 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_000160_180 Hb_000160_180 Hb_001318_260--Hb_000160_180 Hb_018133_020--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_018133_020--Hb_026053_020 Hb_018133_020--Hb_001279_080 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_131181_010--Hb_026053_020 Hb_131181_010--Hb_000160_180 Hb_131181_010--Hb_001279_080 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_002540_080--Hb_000160_180 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_000160_180--Hb_018133_020 Hb_000160_180--Hb_001279_080 Hb_000160_180--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.805 12.858 40.15 20.3653 15.4435 18.2748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1499 59.0949 27.8379 19.1247 39.2655

CAGE analysis