Hb_001318_270

Information

Type -
Description -
Location Contig1318: 226124-228268
Sequence    

Annotation

kegg
ID cit:102610187
description pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like
nr
ID XP_012082955.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
swissprot
ID Q680H3
description Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
trembl
ID A0A067JWG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09232: 222590-225505 , PASA_asmbl_09234: 226045-228436
cDNA
(Sanger)
(ID:Location)		 010_K12.ab1: 226045-226732 , 043_O20.ab1: 226045-226535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_270 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
2 Hb_012325_020 0.0521235563 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
3 Hb_002110_150 0.0772185081 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
4 Hb_001726_020 0.080234047 - - PREDICTED: endophilin-A1 [Jatropha curcas]
5 Hb_000041_100 0.0807593375 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
6 Hb_050622_050 0.0816330183 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
7 Hb_000783_020 0.0819108304 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
8 Hb_003291_010 0.0819454034 - - ATP-dependent protease La, putative [Ricinus communis]
9 Hb_000445_040 0.0829206625 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
10 Hb_003688_150 0.084298772 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_005188_020 0.0871753285 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
12 Hb_001959_190 0.0877067365 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
13 Hb_020805_130 0.0877946949 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_003371_090 0.0882635559 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
15 Hb_009767_110 0.0885126827 - - -
16 Hb_009382_010 0.0896553837 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_005463_100 0.0897093292 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
18 Hb_002660_010 0.0900352738 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
19 Hb_000041_110 0.0905832462 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
20 Hb_000707_050 0.0913659098 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_270 Hb_001318_270 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_003976_030 Hb_003976_030 Hb_012325_020--Hb_003976_030 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_002046_180 Hb_002046_180 Hb_002110_150--Hb_002046_180 Hb_008725_260 Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_005779_060 Hb_005779_060 Hb_002110_150--Hb_005779_060 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_005539_280 Hb_005539_280 Hb_001726_020--Hb_005539_280 Hb_000250_060 Hb_000250_060 Hb_001726_020--Hb_000250_060 Hb_000504_140 Hb_000504_140 Hb_001726_020--Hb_000504_140 Hb_001726_020--Hb_005779_060 Hb_001726_020--Hb_000783_020 Hb_000529_170 Hb_000529_170 Hb_001726_020--Hb_000529_170 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_004117_260 Hb_004117_260 Hb_050622_050--Hb_004117_260 Hb_006017_010 Hb_006017_010 Hb_050622_050--Hb_006017_010 Hb_001617_050 Hb_001617_050 Hb_050622_050--Hb_001617_050 Hb_050622_050--Hb_000297_010 Hb_050622_050--Hb_002110_150 Hb_000985_030 Hb_000985_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_001489_080 Hb_001489_080 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25328 4.37107 2.92673 2.6923 4.70139 4.02058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42834 5.99915 9.99179 4.80961 5.22061

CAGE analysis