Hb_001320_020

Information

Type -
Description -
Location Contig1320: 55893-57422
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001320_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_062317_020 0.0352398447 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001496_050 0.1148121863 - - yth domain-containing protein, putative [Ricinus communis]
4 Hb_000968_070 0.1599194878 - - -
5 Hb_007520_070 0.2172914119 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
6 Hb_007793_030 0.229225237 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
7 Hb_000028_380 0.242325518 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
8 Hb_034359_010 0.2441365394 - - -
9 Hb_002311_260 0.2466142581 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
10 Hb_002255_080 0.2531017051 - - -
11 Hb_000659_090 0.2604194556 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_006237_030 0.2622373306 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000473_160 0.2627347185 - - PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
14 Hb_095937_010 0.2645956631 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_006807_010 0.2665321034 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
16 Hb_001355_060 0.2666963746 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_002973_120 0.2699833075 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
18 Hb_155423_010 0.271623724 - - -
19 Hb_040473_010 0.2732973586 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
20 Hb_131320_010 0.2751721442 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001320_020 Hb_001320_020 Hb_062317_020 Hb_062317_020 Hb_001320_020--Hb_062317_020 Hb_001496_050 Hb_001496_050 Hb_001320_020--Hb_001496_050 Hb_000968_070 Hb_000968_070 Hb_001320_020--Hb_000968_070 Hb_007520_070 Hb_007520_070 Hb_001320_020--Hb_007520_070 Hb_007793_030 Hb_007793_030 Hb_001320_020--Hb_007793_030 Hb_000028_380 Hb_000028_380 Hb_001320_020--Hb_000028_380 Hb_062317_020--Hb_001496_050 Hb_062317_020--Hb_000968_070 Hb_062317_020--Hb_007520_070 Hb_062317_020--Hb_007793_030 Hb_034359_010 Hb_034359_010 Hb_062317_020--Hb_034359_010 Hb_001496_050--Hb_000968_070 Hb_008055_030 Hb_008055_030 Hb_001496_050--Hb_008055_030 Hb_001496_050--Hb_000028_380 Hb_000811_090 Hb_000811_090 Hb_001496_050--Hb_000811_090 Hb_000968_070--Hb_007793_030 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_041813_010 Hb_041813_010 Hb_007520_070--Hb_041813_010 Hb_007520_070--Hb_000968_070 Hb_000076_050 Hb_000076_050 Hb_007520_070--Hb_000076_050 Hb_102602_020 Hb_102602_020 Hb_007520_070--Hb_102602_020 Hb_006483_120 Hb_006483_120 Hb_007793_030--Hb_006483_120 Hb_008484_020 Hb_008484_020 Hb_007793_030--Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_007793_030--Hb_003291_030 Hb_182651_020 Hb_182651_020 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120 Hb_040473_010 Hb_040473_010 Hb_000028_380--Hb_040473_010 Hb_013420_070 Hb_013420_070 Hb_000028_380--Hb_013420_070 Hb_000028_380--Hb_000968_070 Hb_007885_110 Hb_007885_110 Hb_000028_380--Hb_007885_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0144499 0 0.0131863 0 0.0152906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0250362 0.0647547

CAGE analysis