Hb_001322_010

Information

Type -
Description -
Location Contig1322: 10150-13613
Sequence    

Annotation

kegg
ID mdm:103437052
description uncharacterized LOC103437052
nr
ID XP_012070066.1
description PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KUU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03458 PE=4 SV=1
Gene Ontology
ID GO:0005488
description increased dna methylation 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_010 0.0 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
2 Hb_022597_010 0.0673927362 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
3 Hb_000860_030 0.0855249506 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000705_070 0.1063136749 - - conserved hypothetical protein [Ricinus communis]
5 Hb_156850_040 0.1094876426 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
6 Hb_000638_110 0.1111260006 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
7 Hb_000740_080 0.1246321029 - - -
8 Hb_003582_010 0.1262662376 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
9 Hb_005056_120 0.1277510085 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000000_300 0.1301750042 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
11 Hb_001775_060 0.1303878939 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000897_010 0.1309290255 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
13 Hb_002768_040 0.1323757298 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103632_010 0.1341296993 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_004617_010 0.1346784539 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
16 Hb_011344_050 0.1407647907 - - PREDICTED: 21 kDa protein [Jatropha curcas]
17 Hb_001255_030 0.1422246714 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
18 Hb_000149_020 0.1438687776 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
19 Hb_001300_030 0.143969155 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
20 Hb_005736_110 0.1496994046 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_001322_010 Hb_001322_010 Hb_022597_010 Hb_022597_010 Hb_001322_010--Hb_022597_010 Hb_000860_030 Hb_000860_030 Hb_001322_010--Hb_000860_030 Hb_000705_070 Hb_000705_070 Hb_001322_010--Hb_000705_070 Hb_156850_040 Hb_156850_040 Hb_001322_010--Hb_156850_040 Hb_000638_110 Hb_000638_110 Hb_001322_010--Hb_000638_110 Hb_000740_080 Hb_000740_080 Hb_001322_010--Hb_000740_080 Hb_022597_010--Hb_000860_030 Hb_000897_010 Hb_000897_010 Hb_022597_010--Hb_000897_010 Hb_022597_010--Hb_000638_110 Hb_005245_030 Hb_005245_030 Hb_022597_010--Hb_005245_030 Hb_005736_110 Hb_005736_110 Hb_022597_010--Hb_005736_110 Hb_000860_030--Hb_000705_070 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_000840_220 Hb_000840_220 Hb_000705_070--Hb_000840_220 Hb_000705_070--Hb_000638_110 Hb_003582_010 Hb_003582_010 Hb_000705_070--Hb_003582_010 Hb_001775_060 Hb_001775_060 Hb_000705_070--Hb_001775_060 Hb_156850_040--Hb_000638_110 Hb_156850_040--Hb_022597_010 Hb_002277_020 Hb_002277_020 Hb_156850_040--Hb_002277_020 Hb_156850_040--Hb_003582_010 Hb_001141_010 Hb_001141_010 Hb_000638_110--Hb_001141_010 Hb_103632_010 Hb_103632_010 Hb_000638_110--Hb_103632_010 Hb_002835_120 Hb_002835_120 Hb_000638_110--Hb_002835_120 Hb_004757_040 Hb_004757_040 Hb_000638_110--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_000638_110--Hb_002837_150 Hb_019299_020 Hb_019299_020 Hb_000740_080--Hb_019299_020 Hb_000740_080--Hb_000897_010 Hb_000149_020 Hb_000149_020 Hb_000740_080--Hb_000149_020 Hb_002768_040 Hb_002768_040 Hb_000740_080--Hb_002768_040 Hb_004970_100 Hb_004970_100 Hb_000740_080--Hb_004970_100 Hb_000352_360 Hb_000352_360 Hb_000740_080--Hb_000352_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0327514 0.974801 0.283996 5.02012 0.0320893 0.019118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0248267 0 0.0369522 0.474461 0.288207

CAGE analysis