Hb_001322_020

Information

Type -
Description -
Location Contig1322: 14005-24240
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07930g
description POPTRDRAFT_830729; hypothetical protein
nr
ID XP_011031949.1
description PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
swissprot
ID Q8L6Y4
description Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2
trembl
ID A0A067L743
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09257: 13887-20240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_020 0.0 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
2 Hb_000959_220 0.0873828155 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003470_040 0.0880768399 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
4 Hb_029695_080 0.0938799694 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
5 Hb_000062_360 0.0959761512 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
6 Hb_003506_030 0.1007101077 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_014231_020 0.1010728938 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
8 Hb_001005_020 0.102354514 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
9 Hb_009449_060 0.1032008734 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
10 Hb_000979_060 0.1037503991 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
11 Hb_004712_190 0.1041803029 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
12 Hb_000207_200 0.104674344 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
13 Hb_006816_100 0.1065270501 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
14 Hb_155025_010 0.1081362252 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
15 Hb_000048_080 0.1084647978 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
16 Hb_005977_030 0.108751289 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
17 Hb_001839_020 0.1088712783 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_005731_110 0.1093858555 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
19 Hb_001500_120 0.1104159027 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000139_220 0.1111384158 - - leucine rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001322_020 Hb_001322_020 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_005731_110 Hb_005731_110 Hb_000959_220--Hb_005731_110 Hb_000012_270 Hb_000012_270 Hb_000959_220--Hb_000012_270 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_029695_080--Hb_000207_200 Hb_029695_080--Hb_033642_120 Hb_002909_040 Hb_002909_040 Hb_029695_080--Hb_002909_040 Hb_001221_440 Hb_001221_440 Hb_029695_080--Hb_001221_440 Hb_029695_080--Hb_003506_030 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_000062_360--Hb_003470_040 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_003506_030--Hb_000089_210 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_004712_190 Hb_004712_190 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_005144_210 Hb_005144_210 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.41563 10.67 23.9823 7.99123 7.42169 4.85764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73261 5.63081 3.17708 4.86293 6.80201

CAGE analysis