Hb_001322_060

Information

Type -
Description -
Location Contig1322: 70781-72288
Sequence    

Annotation

kegg
ID pda:103702307
description putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial
nr
ID CBI23541.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P0C7R1
description Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana GN=DYW1 PE=1 SV=1
trembl
ID A0A0B2R943
description Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_035844 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000003_800 1.75636e-05 - - conserved hypothetical protein [Ricinus communis]
3 Hb_137288_010 0.000969577 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
4 Hb_003266_110 0.0018989181 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001948_060 0.0047216419 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_020479_010 0.0059624415 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
7 Hb_000413_090 0.0063804978 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
8 Hb_187418_010 0.0084115093 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
9 Hb_001571_070 0.0095613041 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_002391_260 0.0103975901 - - hypothetical protein RCOM_0017280 [Ricinus communis]
11 Hb_001817_200 0.0122770231 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
12 Hb_001504_200 0.0130692319 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
13 Hb_004712_120 0.0153994504 - - Pectinesterase U1 precursor, putative [Ricinus communis]
14 Hb_003549_110 0.0155915686 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
15 Hb_002259_100 0.0192861735 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
16 Hb_001728_090 0.0235296956 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
17 Hb_004645_060 0.0242035549 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
18 Hb_002986_150 0.0259167042 - - hypothetical protein glysoja_022060 [Glycine soja]
19 Hb_004994_270 0.0352733635 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
20 Hb_009323_010 0.0356118158 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001322_060 Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_001322_060--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_001322_060--Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_001322_060--Hb_003266_110 Hb_001948_060 Hb_001948_060 Hb_001322_060--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001322_060--Hb_020479_010 Hb_000413_090 Hb_000413_090 Hb_001322_060--Hb_000413_090 Hb_000003_800--Hb_137288_010 Hb_000003_800--Hb_003266_110 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010 Hb_000003_800--Hb_000413_090 Hb_137288_010--Hb_003266_110 Hb_137288_010--Hb_001948_060 Hb_137288_010--Hb_020479_010 Hb_137288_010--Hb_000413_090 Hb_003266_110--Hb_001948_060 Hb_003266_110--Hb_020479_010 Hb_187418_010 Hb_187418_010 Hb_003266_110--Hb_187418_010 Hb_001948_060--Hb_020479_010 Hb_001948_060--Hb_187418_010 Hb_020479_010--Hb_187418_010 Hb_001571_070 Hb_001571_070 Hb_000413_090--Hb_001571_070 Hb_002391_260 Hb_002391_260 Hb_000413_090--Hb_002391_260 Hb_001817_200 Hb_001817_200 Hb_000413_090--Hb_001817_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0816108 0.0358758 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis