Hb_001322_070

Information

Type -
Description -
Location Contig1322: 73198-75654
Sequence    

Annotation

kegg
ID rcu:RCOM_0192270
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002531780.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID B9T0L1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192270 PE=3 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09262: 73225-75613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_070 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_098315_020 0.1039389864 - - hypothetical protein M569_15712 [Genlisea aurea]
3 Hb_005460_060 0.113015877 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
4 Hb_000009_290 0.1189367266 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
5 Hb_000465_510 0.1191940643 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
6 Hb_000215_330 0.1194771986 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
7 Hb_005306_070 0.1197548609 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
8 Hb_002314_010 0.1219756431 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
9 Hb_000077_180 0.1235064898 - - -
10 Hb_004230_020 0.1241732128 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
11 Hb_000110_120 0.1249587587 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
12 Hb_002060_010 0.1310055971 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_002301_160 0.1342251583 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
14 Hb_000107_300 0.1361460671 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
15 Hb_000739_140 0.136965987 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
16 Hb_001863_130 0.1380409849 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
17 Hb_001410_060 0.1394521224 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
18 Hb_000768_130 0.1398432146 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
19 Hb_000189_540 0.1427696909 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
20 Hb_002303_060 0.145161528 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001322_070 Hb_001322_070 Hb_098315_020 Hb_098315_020 Hb_001322_070--Hb_098315_020 Hb_005460_060 Hb_005460_060 Hb_001322_070--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_001322_070--Hb_000009_290 Hb_000465_510 Hb_000465_510 Hb_001322_070--Hb_000465_510 Hb_000215_330 Hb_000215_330 Hb_001322_070--Hb_000215_330 Hb_005306_070 Hb_005306_070 Hb_001322_070--Hb_005306_070 Hb_002060_010 Hb_002060_010 Hb_098315_020--Hb_002060_010 Hb_015299_030 Hb_015299_030 Hb_098315_020--Hb_015299_030 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_001188_030 Hb_001188_030 Hb_098315_020--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_098315_020--Hb_001718_030 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_005460_060--Hb_004984_030 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_002301_160 Hb_002301_160 Hb_000009_290--Hb_002301_160 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_002045_070 Hb_002045_070 Hb_000009_290--Hb_002045_070 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060 Hb_003929_150 Hb_003929_150 Hb_000465_510--Hb_003929_150 Hb_000768_130 Hb_000768_130 Hb_000465_510--Hb_000768_130 Hb_000465_510--Hb_002060_010 Hb_000465_510--Hb_000327_380 Hb_010560_030 Hb_010560_030 Hb_000465_510--Hb_010560_030 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_000215_330--Hb_002303_060 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_005306_070--Hb_000107_300 Hb_005306_070--Hb_001410_060 Hb_005306_070--Hb_003494_050 Hb_005269_080 Hb_005269_080 Hb_005306_070--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.244 19.381 36.2707 75.7786 6.09904 14.4125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.596 95.211 26.3766 17.2171 18.64

CAGE analysis