Hb_001322_110

Information

Type -
Description -
Location Contig1322: 86983-93735
Sequence    

Annotation

kegg
ID rcu:RCOM_0192620
description hypothetical protein
nr
ID XP_002531785.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0L6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09265: 87082-93438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012799_170 0.0689259693 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
3 Hb_000137_040 0.0732837441 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_002408_020 0.0777867479 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
5 Hb_003124_150 0.0845960494 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
6 Hb_000811_070 0.0846232819 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
7 Hb_000510_290 0.0857844437 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_032264_070 0.086899364 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
9 Hb_011689_120 0.0871729226 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
10 Hb_011457_050 0.0892042392 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
11 Hb_002871_190 0.0902839717 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
12 Hb_006846_150 0.0906208695 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011716_130 0.0916400219 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
14 Hb_003077_020 0.0922162132 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000614_220 0.0938490701 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
16 Hb_000827_050 0.0942644229 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_005167_010 0.0947355866 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
18 Hb_003513_010 0.0947690596 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
19 Hb_003728_060 0.0952899874 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
20 Hb_000487_260 0.0957323468 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001322_110 Hb_001322_110 Hb_012799_170 Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260 Hb_000061_210 Hb_000061_210 Hb_002408_020--Hb_000061_210 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_004324_270 Hb_004324_270 Hb_002408_020--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_002408_020--Hb_012675_050 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_000928_070 Hb_000928_070 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020 Hb_006846_150 Hb_006846_150 Hb_000811_070--Hb_006846_150 Hb_008421_020 Hb_008421_020 Hb_000811_070--Hb_008421_020 Hb_000487_260 Hb_000487_260 Hb_000811_070--Hb_000487_260 Hb_007904_230 Hb_007904_230 Hb_000811_070--Hb_007904_230 Hb_006740_030 Hb_006740_030 Hb_000811_070--Hb_006740_030 Hb_000811_070--Hb_005167_010 Hb_000614_220 Hb_000614_220 Hb_000510_290--Hb_000614_220 Hb_000130_220 Hb_000130_220 Hb_000510_290--Hb_000130_220 Hb_003020_220 Hb_003020_220 Hb_000510_290--Hb_003020_220 Hb_003038_240 Hb_003038_240 Hb_000510_290--Hb_003038_240 Hb_011689_120 Hb_011689_120 Hb_000510_290--Hb_011689_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58455 5.41471 15.5963 8.14804 8.64011 8.50036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6215 18.7721 13.5496 8.38668 16.5834

CAGE analysis