Hb_001322_150

Information

Type -
Description -
Location Contig1322: 124380-128976
Sequence    

Annotation

kegg
ID mdm:103420181
description vesicle-associated protein 2-1-like
nr
ID XP_012070082.1
description PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
swissprot
ID Q9LVU1
description Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=1 SV=1
trembl
ID A0A067L615
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03471 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09272: 124193-128967 , PASA_asmbl_09273: 124285-126924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_150 0.0 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
2 Hb_015175_030 0.0945444006 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
3 Hb_003414_050 0.098156006 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
4 Hb_000656_170 0.0988735607 - - lsm1, putative [Ricinus communis]
5 Hb_003671_020 0.1002050935 - - calcineurin B, putative [Ricinus communis]
6 Hb_007100_030 0.1002828422 - - 40S ribosomal protein S17B [Hevea brasiliensis]
7 Hb_000125_100 0.1091040554 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
8 Hb_002301_060 0.1091440661 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
9 Hb_009051_030 0.1098670027 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
10 Hb_000152_420 0.1099497549 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
11 Hb_001214_160 0.1107909158 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_001814_050 0.1134618336 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000690_180 0.1134942459 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
14 Hb_007441_040 0.1160784707 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
15 Hb_000102_020 0.1162164428 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
16 Hb_001057_040 0.1165925913 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_001242_110 0.1170914741 - - 40S ribosomal protein S18, putative [Ricinus communis]
18 Hb_001369_640 0.1187877732 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
19 Hb_000134_070 0.1191892716 - - 60S ribosomal protein L6, putative [Ricinus communis]
20 Hb_000058_060 0.1195368953 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_150 Hb_001322_150 Hb_015175_030 Hb_015175_030 Hb_001322_150--Hb_015175_030 Hb_003414_050 Hb_003414_050 Hb_001322_150--Hb_003414_050 Hb_000656_170 Hb_000656_170 Hb_001322_150--Hb_000656_170 Hb_003671_020 Hb_003671_020 Hb_001322_150--Hb_003671_020 Hb_007100_030 Hb_007100_030 Hb_001322_150--Hb_007100_030 Hb_000125_100 Hb_000125_100 Hb_001322_150--Hb_000125_100 Hb_004032_100 Hb_004032_100 Hb_015175_030--Hb_004032_100 Hb_000283_110 Hb_000283_110 Hb_015175_030--Hb_000283_110 Hb_001505_020 Hb_001505_020 Hb_015175_030--Hb_001505_020 Hb_001998_050 Hb_001998_050 Hb_015175_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_015175_030--Hb_000227_230 Hb_000274_020 Hb_000274_020 Hb_015175_030--Hb_000274_020 Hb_003414_050--Hb_003671_020 Hb_009615_070 Hb_009615_070 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_003671_020--Hb_000125_100 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_003671_020--Hb_009615_070 Hb_003671_020--Hb_000479_190 Hb_001842_040 Hb_001842_040 Hb_007100_030--Hb_001842_040 Hb_000441_190 Hb_000441_190 Hb_007100_030--Hb_000441_190 Hb_000963_180 Hb_000963_180 Hb_007100_030--Hb_000963_180 Hb_001141_030 Hb_001141_030 Hb_007100_030--Hb_001141_030 Hb_138585_060 Hb_138585_060 Hb_007100_030--Hb_138585_060 Hb_003203_040 Hb_003203_040 Hb_007100_030--Hb_003203_040 Hb_092337_010 Hb_092337_010 Hb_000125_100--Hb_092337_010 Hb_001205_150 Hb_001205_150 Hb_000125_100--Hb_001205_150 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1639 13.6141 9.28933 23.3005 9.76537 34.3708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.102 58.55 29.8157 13.5475 8.10799

CAGE analysis