Hb_001322_210

Information

Type transcription factor
Description TF Family: SET
Location Contig1322: 183777-187895
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08130g
description hypothetical protein
nr
ID XP_012070093.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
swissprot
ID Q8VZ17
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2
trembl
ID A0A067KY84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03479 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09286: 182858-185317 , PASA_asmbl_09287: 183098-185317 , PASA_asmbl_09288: 185330-187878 , PASA_asmbl_09289: 185330-187066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_210 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
2 Hb_000780_220 0.0662469918 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
3 Hb_002291_070 0.0698878006 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
4 Hb_003216_080 0.0714114764 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
5 Hb_002471_210 0.071869349 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
6 Hb_000347_130 0.0727896651 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
7 Hb_007849_020 0.0745514362 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
8 Hb_003544_100 0.0753385158 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
9 Hb_017075_010 0.0758305527 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
10 Hb_000283_070 0.0791141088 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
11 Hb_000743_050 0.0798798986 - - unnamed protein product [Vitis vinifera]
12 Hb_001700_040 0.0815603376 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_116929_010 0.0837700231 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
14 Hb_009411_010 0.0849026739 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
15 Hb_117552_010 0.085935205 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000739_220 0.0859416355 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
17 Hb_000627_080 0.086285062 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_025012_010 0.0863114929 - - PREDICTED: importin-4 [Vitis vinifera]
19 Hb_000878_010 0.0868650347 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
20 Hb_003623_030 0.0883725051 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_001322_210 Hb_001322_210 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_000780_220--Hb_002291_070 Hb_000780_220--Hb_002471_210 Hb_000743_040 Hb_000743_040 Hb_000780_220--Hb_000743_040 Hb_000780_220--Hb_007849_020 Hb_000046_450 Hb_000046_450 Hb_000780_220--Hb_000046_450 Hb_002291_070--Hb_002471_210 Hb_002291_070--Hb_007849_020 Hb_000475_020 Hb_000475_020 Hb_002291_070--Hb_000475_020 Hb_000250_070 Hb_000250_070 Hb_002291_070--Hb_000250_070 Hb_003938_080 Hb_003938_080 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001930_010 Hb_001930_010 Hb_003216_080--Hb_001930_010 Hb_002471_210--Hb_007849_020 Hb_002471_210--Hb_000475_020 Hb_001811_120 Hb_001811_120 Hb_002471_210--Hb_001811_120 Hb_002471_210--Hb_000250_070 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_006816_300 Hb_006816_300 Hb_007849_020--Hb_006816_300 Hb_007849_020--Hb_000250_070 Hb_000227_380 Hb_000227_380 Hb_007849_020--Hb_000227_380 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.333 13.3574 4.05721 7.39197 19.0522 29.9983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92728 6.42033 13.5244 12.552 10.829

CAGE analysis