Hb_001322_230

Information

Type -
Description -
Location Contig1322: 192864-197544
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08150g
description ATP-dependent Clp protease proteolytic subunit family protein
nr
ID XP_011031968.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
swissprot
ID Q8LB10
description ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
trembl
ID A9PAS6
description ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa GN=POPTR_0003s08150g PE=2 SV=1
Gene Ontology
ID GO:0009570
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09291: 192817-197525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_230 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
2 Hb_000820_140 0.0921645642 - - histone H4 [Zea mays]
3 Hb_002053_010 0.1075847287 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_001711_120 0.1110903819 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
5 Hb_003602_060 0.1152950457 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
6 Hb_000560_040 0.1155986744 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
7 Hb_001863_070 0.1199854808 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
8 Hb_000307_070 0.1200623693 - - protein kinase, putative [Ricinus communis]
9 Hb_000926_080 0.12204345 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
10 Hb_001789_200 0.1230442372 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
11 Hb_068194_010 0.1242709003 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
12 Hb_003462_180 0.1256060961 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
13 Hb_000189_130 0.1261368781 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
14 Hb_002075_030 0.1288619347 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
15 Hb_000388_060 0.1291562066 - - fructokinase [Manihot esculenta]
16 Hb_001587_040 0.1309069524 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
17 Hb_000676_020 0.1309329739 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
18 Hb_005656_170 0.1311548357 - - PREDICTED: uncharacterized protein LOC105637447 isoform X1 [Jatropha curcas]
19 Hb_027506_040 0.132479905 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_009780_050 0.1332705635 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001322_230 Hb_001322_230 Hb_000820_140 Hb_000820_140 Hb_001322_230--Hb_000820_140 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_000392_550 Hb_000392_550 Hb_001711_120--Hb_000392_550 Hb_001711_120--Hb_001369_790 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_002529_090 Hb_002529_090 Hb_000560_040--Hb_002529_090 Hb_055690_010 Hb_055690_010 Hb_000560_040--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000560_040--Hb_003440_020 Hb_002075_030 Hb_002075_030 Hb_000560_040--Hb_002075_030 Hb_032631_070 Hb_032631_070 Hb_000560_040--Hb_032631_070 Hb_000560_040--Hb_002053_010 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86898 8.69443 39.4278 20.6971 3.14232 4.38945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.888 21.6465 6.97026 12.2871 35.2817

CAGE analysis