Hb_001328_040

Information

Type -
Description -
Location Contig1328: 27457-33342
Sequence    

Annotation

kegg
ID tcc:TCM_002165
description Uncharacterized protein isoform 1
nr
ID XP_012074719.1
description PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10496 PE=4 SV=1
Gene Ontology
ID GO:0031023
description haus augmin-like complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09312: 27455-33335 , PASA_asmbl_09313: 32028-32242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_040 0.0 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
2 Hb_001662_070 0.0705256409 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
3 Hb_000815_320 0.0715988989 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
4 Hb_032264_120 0.0720527988 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
5 Hb_002811_260 0.0785492848 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
6 Hb_008847_040 0.0785622651 - - conserved hypothetical protein [Ricinus communis]
7 Hb_165132_010 0.0795190904 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
8 Hb_001279_310 0.0812217778 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
9 Hb_024682_010 0.0861888401 - - sterol isomerase, putative [Ricinus communis]
10 Hb_001184_090 0.0866320678 - - PREDICTED: TIP41-like protein [Jatropha curcas]
11 Hb_003057_090 0.0869793495 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
12 Hb_001157_020 0.0869983154 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
13 Hb_008686_080 0.0874046551 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
14 Hb_010407_040 0.0878994684 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
15 Hb_001821_010 0.0891959911 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
16 Hb_007477_070 0.0898193151 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
17 Hb_012725_050 0.0899036438 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
18 Hb_000251_070 0.091412524 - - hypothetical protein L484_010641 [Morus notabilis]
19 Hb_000494_020 0.0921142387 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
20 Hb_000787_050 0.0921611221 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001328_040 Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_001662_070--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_000815_320--Hb_001821_010 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000982_090 Hb_000982_090 Hb_032264_120--Hb_000982_090 Hb_006570_140 Hb_006570_140 Hb_032264_120--Hb_006570_140 Hb_032264_120--Hb_002811_260 Hb_004800_230 Hb_004800_230 Hb_032264_120--Hb_004800_230 Hb_007477_070 Hb_007477_070 Hb_032264_120--Hb_007477_070 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_003057_090 Hb_003057_090 Hb_008847_040--Hb_003057_090 Hb_007441_330 Hb_007441_330 Hb_008847_040--Hb_007441_330 Hb_008847_040--Hb_000815_320 Hb_000261_160 Hb_000261_160 Hb_008847_040--Hb_000261_160 Hb_008847_040--Hb_000347_540 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.5854 7.77703 36.992 30.2136 35.1208 39.5837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.9432 68.954 38.7081 23.2292 16.2232

CAGE analysis