Hb_001329_020

Information

Type -
Description -
Location Contig1329: 13840-18295
Sequence    

Annotation

kegg
ID rcu:RCOM_1345360
description Boron transporter, putative
nr
ID XP_011003170.1
description PREDICTED: probable boron transporter 2 [Populus euphratica]
swissprot
ID Q8VYR7
description Boron transporter 1 OS=Arabidopsis thaliana GN=BOR1 PE=1 SV=1
trembl
ID B9RN85
description Boron transporter, putative OS=Ricinus communis GN=RCOM_1345360 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09378: 17011-17250 , PASA_asmbl_09379: 17492-18235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_020 0.0 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
2 Hb_000302_100 0.17440987 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
3 Hb_002122_060 0.1942863441 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
4 Hb_004117_330 0.2032149966 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003536_090 0.210034837 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_012753_180 0.2110540076 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
7 Hb_000707_040 0.2130475967 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
8 Hb_000313_280 0.2161407381 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
9 Hb_002582_080 0.2211039029 - - -
10 Hb_104571_010 0.2226689024 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
11 Hb_000413_080 0.2232873266 - - -
12 Hb_000089_200 0.2301237093 - - hypothetical protein VITISV_019292 [Vitis vinifera]
13 Hb_000110_380 0.2313703126 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
14 Hb_002686_260 0.2319533749 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
15 Hb_123301_010 0.236487702 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003226_130 0.2433360075 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
17 Hb_034299_070 0.244577717 - - actin binding protein, putative [Ricinus communis]
18 Hb_002097_140 0.2450561757 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
19 Hb_002164_010 0.2470196746 - - Stellacyanin, putative [Ricinus communis]
20 Hb_000015_140 0.2501827655 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]

Gene co-expression network

sample Hb_001329_020 Hb_001329_020 Hb_000302_100 Hb_000302_100 Hb_001329_020--Hb_000302_100 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_004117_330 Hb_004117_330 Hb_001329_020--Hb_004117_330 Hb_003536_090 Hb_003536_090 Hb_001329_020--Hb_003536_090 Hb_012753_180 Hb_012753_180 Hb_001329_020--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_001329_020--Hb_000707_040 Hb_066514_010 Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_000616_100 Hb_000616_100 Hb_002122_060--Hb_000616_100 Hb_000313_280 Hb_000313_280 Hb_002122_060--Hb_000313_280 Hb_000015_140 Hb_000015_140 Hb_002122_060--Hb_000015_140 Hb_002894_070 Hb_002894_070 Hb_002122_060--Hb_002894_070 Hb_008536_030 Hb_008536_030 Hb_002122_060--Hb_008536_030 Hb_002054_090 Hb_002054_090 Hb_002122_060--Hb_002054_090 Hb_000413_080 Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_004117_330--Hb_007575_090 Hb_005144_170 Hb_005144_170 Hb_004117_330--Hb_005144_170 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_004117_330--Hb_000302_100 Hb_004117_330--Hb_066514_010 Hb_002164_010 Hb_002164_010 Hb_003536_090--Hb_002164_010 Hb_000236_210 Hb_000236_210 Hb_003536_090--Hb_000236_210 Hb_017434_080 Hb_017434_080 Hb_003536_090--Hb_017434_080 Hb_020831_060 Hb_020831_060 Hb_003536_090--Hb_020831_060 Hb_001269_100 Hb_001269_100 Hb_003536_090--Hb_001269_100 Hb_003536_090--Hb_000302_100 Hb_003226_130 Hb_003226_130 Hb_012753_180--Hb_003226_130 Hb_027136_020 Hb_027136_020 Hb_012753_180--Hb_027136_020 Hb_021596_060 Hb_021596_060 Hb_012753_180--Hb_021596_060 Hb_005227_050 Hb_005227_050 Hb_012753_180--Hb_005227_050 Hb_000676_280 Hb_000676_280 Hb_012753_180--Hb_000676_280 Hb_000707_040--Hb_002164_010 Hb_000816_190 Hb_000816_190 Hb_000707_040--Hb_000816_190 Hb_000707_040--Hb_003536_090 Hb_000707_040--Hb_004117_330 Hb_000089_200 Hb_000089_200 Hb_000707_040--Hb_000089_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1223 8.89427 3.28218 50.1168 1.70376 0.251426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27443 6.08542 0.0227215 8.63355 1.21637

CAGE analysis