Hb_001329_030

Information

Type -
Description -
Location Contig1329: 19996-20346
Sequence    

Annotation

kegg
ID rcu:RCOM_1345350
description hypothetical protein
nr
ID XP_002515223.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1345350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_126711_010 0.2022824445 - - JAZ10 [Hevea brasiliensis]
3 Hb_001894_180 0.2329425521 - - galactinol synthase [Manihot esculenta]
4 Hb_009010_040 0.2523796676 - - Peptide transporter, putative [Ricinus communis]
5 Hb_010377_020 0.2638884115 - - -
6 Hb_168319_020 0.275326808 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001638_180 0.2775950454 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
8 Hb_001369_500 0.2777762166 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_002582_080 0.2826486527 - - -
10 Hb_000450_170 0.2838223745 - - conserved hypothetical protein [Ricinus communis]
11 Hb_153774_010 0.2852302107 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003360_050 0.2867779452 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_001268_320 0.2887981833 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
14 Hb_000302_110 0.2888925328 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_004162_060 0.2897761478 - - unnamed protein product [Vitis vinifera]
16 Hb_034299_070 0.290670882 - - actin binding protein, putative [Ricinus communis]
17 Hb_004925_030 0.2942037111 - - EXORDIUM like 1 [Theobroma cacao]
18 Hb_002193_070 0.2989907206 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_007810_090 0.299685051 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
20 Hb_000320_030 0.3065653905 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001329_030 Hb_001329_030 Hb_126711_010 Hb_126711_010 Hb_001329_030--Hb_126711_010 Hb_001894_180 Hb_001894_180 Hb_001329_030--Hb_001894_180 Hb_009010_040 Hb_009010_040 Hb_001329_030--Hb_009010_040 Hb_010377_020 Hb_010377_020 Hb_001329_030--Hb_010377_020 Hb_168319_020 Hb_168319_020 Hb_001329_030--Hb_168319_020 Hb_001638_180 Hb_001638_180 Hb_001329_030--Hb_001638_180 Hb_123301_010 Hb_123301_010 Hb_126711_010--Hb_123301_010 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_000313_280 Hb_000313_280 Hb_126711_010--Hb_000313_280 Hb_000649_340 Hb_000649_340 Hb_126711_010--Hb_000649_340 Hb_001894_180--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_001894_180--Hb_126711_010 Hb_001894_180--Hb_010377_020 Hb_009111_060 Hb_009111_060 Hb_009010_040--Hb_009111_060 Hb_001998_100 Hb_001998_100 Hb_009010_040--Hb_001998_100 Hb_005356_050 Hb_005356_050 Hb_009010_040--Hb_005356_050 Hb_002193_070 Hb_002193_070 Hb_009010_040--Hb_002193_070 Hb_153774_010 Hb_153774_010 Hb_009010_040--Hb_153774_010 Hb_031822_020 Hb_031822_020 Hb_009010_040--Hb_031822_020 Hb_001268_320 Hb_001268_320 Hb_010377_020--Hb_001268_320 Hb_002092_030 Hb_002092_030 Hb_010377_020--Hb_002092_030 Hb_000110_390 Hb_000110_390 Hb_010377_020--Hb_000110_390 Hb_001242_010 Hb_001242_010 Hb_010377_020--Hb_001242_010 Hb_168319_020--Hb_000110_390 Hb_168319_020--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_168319_020--Hb_003360_050 Hb_168319_020--Hb_153774_010 Hb_050229_030 Hb_050229_030 Hb_168319_020--Hb_050229_030 Hb_034299_070 Hb_034299_070 Hb_001638_180--Hb_034299_070 Hb_000483_400 Hb_000483_400 Hb_001638_180--Hb_000483_400 Hb_000179_120 Hb_000179_120 Hb_001638_180--Hb_000179_120 Hb_004453_070 Hb_004453_070 Hb_001638_180--Hb_004453_070 Hb_033354_020 Hb_033354_020 Hb_001638_180--Hb_033354_020 Hb_002686_260 Hb_002686_260 Hb_001638_180--Hb_002686_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237688 0.262185 2.85285 0.110748 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259812 0 0.624119 0.27139 0

CAGE analysis