Hb_001329_140

Information

Type -
Description -
Location Contig1329: 89370-93424
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11020g
description POPTRDRAFT_572550; zinc finger family protein
nr
ID XP_012082972.1
description PREDICTED: zinc finger protein 598 [Jatropha curcas]
swissprot
ID Q76PD2
description E3 ubiquitin-protein ligase hel2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2
trembl
ID A0A067K930
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14090 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger protein 598

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09398: 89689-93711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_140 0.0 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
2 Hb_000684_250 0.0531227795 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
3 Hb_003168_110 0.0538002979 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
4 Hb_000803_260 0.0640768544 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
5 Hb_000037_190 0.0670631165 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
6 Hb_000457_260 0.0677464284 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
7 Hb_000590_050 0.0699993092 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_001199_100 0.0707619135 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
9 Hb_009548_020 0.0722750066 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_172632_080 0.0724859346 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
11 Hb_001004_060 0.0731395601 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
12 Hb_003504_030 0.0732079117 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
13 Hb_002732_040 0.0750493988 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
14 Hb_012395_140 0.075424218 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
15 Hb_188063_020 0.0758248847 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004182_050 0.0771499923 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
17 Hb_000890_060 0.0775211832 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
18 Hb_000343_250 0.0775934869 - - PREDICTED: protein CASC3 [Jatropha curcas]
19 Hb_004676_010 0.0778497182 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
20 Hb_007062_020 0.0794138052 - - gcn4-complementing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_140 Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_000803_260 Hb_000803_260 Hb_001329_140--Hb_000803_260 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_000590_050 Hb_000590_050 Hb_001329_140--Hb_000590_050 Hb_000684_250--Hb_003168_110 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_002253_080 Hb_002253_080 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_003168_110--Hb_000590_050 Hb_000009_560 Hb_000009_560 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_003504_030 Hb_003504_030 Hb_000037_190--Hb_003504_030 Hb_002732_040 Hb_002732_040 Hb_000037_190--Hb_002732_040 Hb_000174_270 Hb_000174_270 Hb_000037_190--Hb_000174_270 Hb_000037_190--Hb_003168_110 Hb_000866_460 Hb_000866_460 Hb_000037_190--Hb_000866_460 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_020378_030 Hb_020378_030 Hb_000590_050--Hb_020378_030 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6358 26.1458 14.2206 21.0333 22.332 34.0471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0714 13.1651 26.9701 21.1877 28.604

CAGE analysis