Hb_001329_160

Information

Type -
Description -
Location Contig1329: 94815-108013
Sequence    

Annotation

kegg
ID rcu:RCOM_1344090
description nucleotide binding protein, putative
nr
ID XP_012082973.1
description PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14092 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09403: 105079-106283 , PASA_asmbl_09405: 107237-107557
cDNA
(Sanger)
(ID:Location)		 030_P02r.ab1: 94444-97053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_160 0.0 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
2 Hb_001838_060 0.0573855158 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
3 Hb_000976_310 0.0648512338 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
4 Hb_008959_020 0.0650703946 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
5 Hb_001080_230 0.0698697169 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_000395_130 0.0724259885 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_001546_080 0.0735677203 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
8 Hb_001266_100 0.073653336 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
9 Hb_011491_010 0.0747435293 - - Protein YME1, putative [Ricinus communis]
10 Hb_000025_410 0.0748017088 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
11 Hb_000329_710 0.075557583 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
12 Hb_007054_060 0.0758638185 - - -
13 Hb_002391_310 0.0767001491 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
14 Hb_003030_060 0.0768084573 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
15 Hb_000003_190 0.0770864775 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
16 Hb_007163_120 0.077299728 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
17 Hb_167498_010 0.0776205647 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_004800_080 0.078538959 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
19 Hb_003370_030 0.078697204 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
20 Hb_000181_320 0.0788544338 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_160 Hb_001329_160 Hb_001838_060 Hb_001838_060 Hb_001329_160--Hb_001838_060 Hb_000976_310 Hb_000976_310 Hb_001329_160--Hb_000976_310 Hb_008959_020 Hb_008959_020 Hb_001329_160--Hb_008959_020 Hb_001080_230 Hb_001080_230 Hb_001329_160--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_001329_160--Hb_000395_130 Hb_001546_080 Hb_001546_080 Hb_001329_160--Hb_001546_080 Hb_001157_040 Hb_001157_040 Hb_001838_060--Hb_001157_040 Hb_001838_060--Hb_000976_310 Hb_007163_120 Hb_007163_120 Hb_001838_060--Hb_007163_120 Hb_001818_070 Hb_001818_070 Hb_001838_060--Hb_001818_070 Hb_000331_670 Hb_000331_670 Hb_001838_060--Hb_000331_670 Hb_000976_310--Hb_001157_040 Hb_000976_310--Hb_008959_020 Hb_000976_310--Hb_001546_080 Hb_000189_560 Hb_000189_560 Hb_000976_310--Hb_000189_560 Hb_000003_190 Hb_000003_190 Hb_008959_020--Hb_000003_190 Hb_008959_020--Hb_001546_080 Hb_007765_110 Hb_007765_110 Hb_008959_020--Hb_007765_110 Hb_008959_020--Hb_001080_230 Hb_001266_100 Hb_001266_100 Hb_008959_020--Hb_001266_100 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000395_130--Hb_000092_020 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_000318_250 Hb_000318_250 Hb_001546_080--Hb_000318_250 Hb_000317_050 Hb_000317_050 Hb_001546_080--Hb_000317_050 Hb_001546_080--Hb_003030_060 Hb_000329_710 Hb_000329_710 Hb_001546_080--Hb_000329_710 Hb_006478_040 Hb_006478_040 Hb_001546_080--Hb_006478_040 Hb_005489_020 Hb_005489_020 Hb_001546_080--Hb_005489_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17301 4.63161 2.00199 1.90779 2.55992 3.53074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80334 4.26969 2.62453 3.42513 2.6502

CAGE analysis